Hb_001511_170

Information

Type -
Description -
Location Contig1511: 213984-217176
Sequence    

Annotation

kegg
ID rcu:RCOM_0838590
description glycosyl transferase, putative
nr
ID XP_012087112.1
description PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
swissprot
ID Q9XEE9
description GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase OS=Arabidopsis thaliana GN=ALG11 PE=1 SV=2
trembl
ID A0A067LJE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01240 PE=4 SV=1
Gene Ontology
ID GO:0005576
description gdp-man:man c -pp-dol alpha- -mannosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12772: 214856-217276 , PASA_asmbl_12773: 218070-230752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_170 0.0 - - PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
2 Hb_002918_060 0.0968987116 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
3 Hb_171900_070 0.1051158489 - - -
4 Hb_002422_050 0.1057633574 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
5 Hb_002631_170 0.1062453198 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
6 Hb_002093_030 0.1062931291 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
7 Hb_001828_160 0.1123289879 - - hypothetical protein F775_31105 [Aegilops tauschii]
8 Hb_001307_080 0.1133511248 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
9 Hb_001427_190 0.116400181 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
10 Hb_000914_080 0.1184197674 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_005333_160 0.1200495334 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
12 Hb_001369_040 0.1220800417 - - PREDICTED: probable isoaspartyl peptidase/L-asparaginase 3 isoform X1 [Jatropha curcas]
13 Hb_000152_260 0.1223298088 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
14 Hb_000913_050 0.1225106996 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
15 Hb_002092_130 0.1232032337 - - PREDICTED: protein CASP-like [Oryza brachyantha]
16 Hb_001198_150 0.1239744176 - - hypothetical protein POPTR_0003s01280g [Populus trichocarpa]
17 Hb_000086_560 0.1241889123 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
18 Hb_150651_030 0.1247968068 - - PREDICTED: metallophosphoesterase 1-like [Jatropha curcas]
19 Hb_001433_070 0.1253989954 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
20 Hb_008103_080 0.1264751766 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001511_170 Hb_001511_170 Hb_002918_060 Hb_002918_060 Hb_001511_170--Hb_002918_060 Hb_171900_070 Hb_171900_070 Hb_001511_170--Hb_171900_070 Hb_002422_050 Hb_002422_050 Hb_001511_170--Hb_002422_050 Hb_002631_170 Hb_002631_170 Hb_001511_170--Hb_002631_170 Hb_002093_030 Hb_002093_030 Hb_001511_170--Hb_002093_030 Hb_001828_160 Hb_001828_160 Hb_001511_170--Hb_001828_160 Hb_000059_140 Hb_000059_140 Hb_002918_060--Hb_000059_140 Hb_005892_030 Hb_005892_030 Hb_002918_060--Hb_005892_030 Hb_140049_030 Hb_140049_030 Hb_002918_060--Hb_140049_030 Hb_002918_060--Hb_002422_050 Hb_001427_190 Hb_001427_190 Hb_002918_060--Hb_001427_190 Hb_002045_150 Hb_002045_150 Hb_002918_060--Hb_002045_150 Hb_005333_160 Hb_005333_160 Hb_171900_070--Hb_005333_160 Hb_000359_120 Hb_000359_120 Hb_171900_070--Hb_000359_120 Hb_005289_040 Hb_005289_040 Hb_171900_070--Hb_005289_040 Hb_000086_560 Hb_000086_560 Hb_171900_070--Hb_000086_560 Hb_032202_120 Hb_032202_120 Hb_171900_070--Hb_032202_120 Hb_011689_060 Hb_011689_060 Hb_171900_070--Hb_011689_060 Hb_001417_050 Hb_001417_050 Hb_002422_050--Hb_001417_050 Hb_004453_110 Hb_004453_110 Hb_002422_050--Hb_004453_110 Hb_001493_040 Hb_001493_040 Hb_002422_050--Hb_001493_040 Hb_000152_260 Hb_000152_260 Hb_002422_050--Hb_000152_260 Hb_005332_020 Hb_005332_020 Hb_002422_050--Hb_005332_020 Hb_000010_360 Hb_000010_360 Hb_002422_050--Hb_000010_360 Hb_002311_290 Hb_002311_290 Hb_002631_170--Hb_002311_290 Hb_009486_180 Hb_009486_180 Hb_002631_170--Hb_009486_180 Hb_001062_010 Hb_001062_010 Hb_002631_170--Hb_001062_010 Hb_001935_110 Hb_001935_110 Hb_002631_170--Hb_001935_110 Hb_000603_030 Hb_000603_030 Hb_002631_170--Hb_000603_030 Hb_002092_130 Hb_002092_130 Hb_002631_170--Hb_002092_130 Hb_002749_110 Hb_002749_110 Hb_002093_030--Hb_002749_110 Hb_003126_100 Hb_003126_100 Hb_002093_030--Hb_003126_100 Hb_022693_030 Hb_022693_030 Hb_002093_030--Hb_022693_030 Hb_002093_030--Hb_000152_260 Hb_008556_030 Hb_008556_030 Hb_002093_030--Hb_008556_030 Hb_002093_030--Hb_001828_160 Hb_000207_310 Hb_000207_310 Hb_001828_160--Hb_000207_310 Hb_000913_050 Hb_000913_050 Hb_001828_160--Hb_000913_050 Hb_021422_010 Hb_021422_010 Hb_001828_160--Hb_021422_010 Hb_006620_020 Hb_006620_020 Hb_001828_160--Hb_006620_020 Hb_000116_180 Hb_000116_180 Hb_001828_160--Hb_000116_180 Hb_001545_200 Hb_001545_200 Hb_001828_160--Hb_001545_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.1979 1.77231 2.49094 1.74459 5.71246 3.88359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.70116 2.06096 0.701933 3.87168 3.01395

CAGE analysis