Hb_000086_560

Information

Type transcription factor
Description TF Family: SET
Location Contig86: 476833-483487
Sequence    

Annotation

kegg
ID rcu:RCOM_0542660
description set domain protein, putative (EC:2.1.1.43)
nr
ID XP_012085242.1
description PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
swissprot
ID Q9FNC7
description Histone-lysine N-methyltransferase SUVR2 OS=Arabidopsis thaliana GN=SUVR2 PE=2 SV=2
trembl
ID A0A067JR91
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17634 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n-methyltransferase suvr2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60768: 467700-478364 , PASA_asmbl_60770: 480256-481111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_560 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
2 Hb_005333_160 0.0688512993 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
3 Hb_011930_080 0.0813251795 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
4 Hb_171900_070 0.0816559933 - - -
5 Hb_001427_190 0.0828514912 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
6 Hb_005053_010 0.0829861247 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
7 Hb_002374_260 0.0846938789 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
8 Hb_019654_040 0.0864069348 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
9 Hb_001301_220 0.0871449411 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
10 Hb_005289_040 0.0890167747 - - poly(A) polymerase, putative [Ricinus communis]
11 Hb_004096_070 0.089072152 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Jatropha curcas]
12 Hb_002078_100 0.0898870777 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
13 Hb_143629_150 0.0901925041 - - PREDICTED: flap endonuclease 1 isoform X2 [Prunus mume]
14 Hb_001089_070 0.0916623761 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
15 Hb_009296_010 0.0919821519 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
16 Hb_001454_370 0.0938619351 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
17 Hb_001307_080 0.0939341125 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
18 Hb_001832_130 0.0939894443 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
19 Hb_003638_090 0.0944008541 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
20 Hb_005588_090 0.0947947092 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]

Gene co-expression network

sample Hb_000086_560 Hb_000086_560 Hb_005333_160 Hb_005333_160 Hb_000086_560--Hb_005333_160 Hb_011930_080 Hb_011930_080 Hb_000086_560--Hb_011930_080 Hb_171900_070 Hb_171900_070 Hb_000086_560--Hb_171900_070 Hb_001427_190 Hb_001427_190 Hb_000086_560--Hb_001427_190 Hb_005053_010 Hb_005053_010 Hb_000086_560--Hb_005053_010 Hb_002374_260 Hb_002374_260 Hb_000086_560--Hb_002374_260 Hb_005333_160--Hb_171900_070 Hb_003943_020 Hb_003943_020 Hb_005333_160--Hb_003943_020 Hb_000359_120 Hb_000359_120 Hb_005333_160--Hb_000359_120 Hb_000523_080 Hb_000523_080 Hb_005333_160--Hb_000523_080 Hb_011689_060 Hb_011689_060 Hb_005333_160--Hb_011689_060 Hb_011930_080--Hb_001427_190 Hb_002374_320 Hb_002374_320 Hb_011930_080--Hb_002374_320 Hb_019654_040 Hb_019654_040 Hb_011930_080--Hb_019654_040 Hb_000648_100 Hb_000648_100 Hb_011930_080--Hb_000648_100 Hb_002078_100 Hb_002078_100 Hb_011930_080--Hb_002078_100 Hb_002888_070 Hb_002888_070 Hb_011930_080--Hb_002888_070 Hb_171900_070--Hb_000359_120 Hb_005289_040 Hb_005289_040 Hb_171900_070--Hb_005289_040 Hb_032202_120 Hb_032202_120 Hb_171900_070--Hb_032202_120 Hb_171900_070--Hb_011689_060 Hb_001935_110 Hb_001935_110 Hb_001427_190--Hb_001935_110 Hb_000152_260 Hb_000152_260 Hb_001427_190--Hb_000152_260 Hb_001427_190--Hb_019654_040 Hb_001427_190--Hb_002078_100 Hb_001427_190--Hb_002888_070 Hb_160459_040 Hb_160459_040 Hb_005053_010--Hb_160459_040 Hb_009771_110 Hb_009771_110 Hb_005053_010--Hb_009771_110 Hb_006618_090 Hb_006618_090 Hb_005053_010--Hb_006618_090 Hb_001504_040 Hb_001504_040 Hb_005053_010--Hb_001504_040 Hb_007929_080 Hb_007929_080 Hb_005053_010--Hb_007929_080 Hb_003104_040 Hb_003104_040 Hb_005053_010--Hb_003104_040 Hb_003878_110 Hb_003878_110 Hb_002374_260--Hb_003878_110 Hb_003638_090 Hb_003638_090 Hb_002374_260--Hb_003638_090 Hb_002374_260--Hb_000152_260 Hb_002304_060 Hb_002304_060 Hb_002374_260--Hb_002304_060 Hb_001377_110 Hb_001377_110 Hb_002374_260--Hb_001377_110 Hb_005332_020 Hb_005332_020 Hb_002374_260--Hb_005332_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.16344 2.60326 4.24467 2.75622 4.39036 4.33776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.85028 1.36814 1.00686 4.03467 2.11202

CAGE analysis