Hb_000504_090

Information

Type -
Description -
Location Contig504: 89519-112455
Sequence    

Annotation

kegg
ID rcu:RCOM_1064240
description Microtubule-associated protein futsch, putative
nr
ID XP_012072190.1
description PREDICTED: titin isoform X10 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S644
description Microtubule-associated protein futsch, putative OS=Ricinus communis GN=RCOM_1064240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45930: 89607-91976 , PASA_asmbl_45931: 93305-93934 , PASA_asmbl_45932: 93305-95970 , PASA_asmbl_45933: 93305-95102 , PASA_asmbl_45934: 96193-98118 , PASA_asmbl_45935: 98275-100485 , PASA_asmbl_45936: 102335-102742 , PASA_asmbl_45937: 104295-105867 , PASA_asmbl_45938: 106600-107643 , PASA_asmbl_45939: 107711-109097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000504_090 0.0 - - PREDICTED: titin isoform X10 [Jatropha curcas]
2 Hb_002217_150 0.1488981586 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
3 Hb_003236_010 0.1510092951 - - PREDICTED: uncharacterized protein LOC105635957 [Jatropha curcas]
4 Hb_005843_040 0.1607397167 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
5 Hb_007101_180 0.1634408279 - - PREDICTED: DNA polymerase beta [Jatropha curcas]
6 Hb_006816_120 0.1634880884 - - Nicotianamine synthase, putative [Ricinus communis]
7 Hb_001433_190 0.1674510482 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
8 Hb_001152_030 0.1680434204 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
9 Hb_015763_020 0.1686787739 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
10 Hb_001247_200 0.1701356452 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
11 Hb_000227_380 0.1703194025 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
12 Hb_000023_060 0.1705905583 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
13 Hb_000984_050 0.1726579687 - - sucrose transporter 5 [Hevea brasiliensis]
14 Hb_001009_290 0.1737428602 - - PREDICTED: elongator complex protein 3-like [Populus euphratica]
15 Hb_000589_040 0.1738185756 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
16 Hb_000206_150 0.1766870742 - - unnamed protein product [Coffea canephora]
17 Hb_006816_410 0.1777900318 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
18 Hb_000108_080 0.1783423114 - - PREDICTED: importin-5 [Jatropha curcas]
19 Hb_006452_090 0.1805929662 - - PREDICTED: eukaryotic translation initiation factor 5B [Jatropha curcas]
20 Hb_000250_080 0.1806478306 - - hypothetical protein B456_003G1510001, partial [Gossypium raimondii]

Gene co-expression network

sample Hb_000504_090 Hb_000504_090 Hb_002217_150 Hb_002217_150 Hb_000504_090--Hb_002217_150 Hb_003236_010 Hb_003236_010 Hb_000504_090--Hb_003236_010 Hb_005843_040 Hb_005843_040 Hb_000504_090--Hb_005843_040 Hb_007101_180 Hb_007101_180 Hb_000504_090--Hb_007101_180 Hb_006816_120 Hb_006816_120 Hb_000504_090--Hb_006816_120 Hb_001433_190 Hb_001433_190 Hb_000504_090--Hb_001433_190 Hb_002217_150--Hb_003236_010 Hb_007849_020 Hb_007849_020 Hb_002217_150--Hb_007849_020 Hb_002471_210 Hb_002471_210 Hb_002217_150--Hb_002471_210 Hb_002217_150--Hb_001433_190 Hb_002291_070 Hb_002291_070 Hb_002217_150--Hb_002291_070 Hb_000227_380 Hb_000227_380 Hb_002217_150--Hb_000227_380 Hb_000108_080 Hb_000108_080 Hb_003236_010--Hb_000108_080 Hb_003236_010--Hb_006816_120 Hb_002411_120 Hb_002411_120 Hb_003236_010--Hb_002411_120 Hb_027073_060 Hb_027073_060 Hb_003236_010--Hb_027073_060 Hb_001080_270 Hb_001080_270 Hb_003236_010--Hb_001080_270 Hb_000365_060 Hb_000365_060 Hb_005843_040--Hb_000365_060 Hb_002105_080 Hb_002105_080 Hb_005843_040--Hb_002105_080 Hb_009421_030 Hb_009421_030 Hb_005843_040--Hb_009421_030 Hb_007904_180 Hb_007904_180 Hb_005843_040--Hb_007904_180 Hb_005843_040--Hb_000108_080 Hb_000640_200 Hb_000640_200 Hb_005843_040--Hb_000640_200 Hb_010080_060 Hb_010080_060 Hb_007101_180--Hb_010080_060 Hb_007101_180--Hb_000227_380 Hb_000589_040 Hb_000589_040 Hb_007101_180--Hb_000589_040 Hb_000342_090 Hb_000342_090 Hb_007101_180--Hb_000342_090 Hb_000264_100 Hb_000264_100 Hb_007101_180--Hb_000264_100 Hb_126643_010 Hb_126643_010 Hb_007101_180--Hb_126643_010 Hb_006882_010 Hb_006882_010 Hb_006816_120--Hb_006882_010 Hb_017711_020 Hb_017711_020 Hb_006816_120--Hb_017711_020 Hb_000258_130 Hb_000258_130 Hb_006816_120--Hb_000258_130 Hb_000152_560 Hb_000152_560 Hb_006816_120--Hb_000152_560 Hb_000940_040 Hb_000940_040 Hb_006816_120--Hb_000940_040 Hb_001278_060 Hb_001278_060 Hb_001433_190--Hb_001278_060 Hb_005129_050 Hb_005129_050 Hb_001433_190--Hb_005129_050 Hb_002883_010 Hb_002883_010 Hb_001433_190--Hb_002883_010 Hb_001433_190--Hb_007849_020 Hb_001196_070 Hb_001196_070 Hb_001433_190--Hb_001196_070 Hb_006002_030 Hb_006002_030 Hb_001433_190--Hb_006002_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.7787 33.8489 0.968918 4.49527 80.299 51.9932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.44799 9.54766 14.6901 43.9392 14.4531

CAGE analysis