Hb_003914_030

Information

Type -
Description -
Location Contig3914: 34643-37591
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003914_030 0.0 - - -
2 Hb_003096_040 0.1702072654 transcription factor TF Family: HB hypothetical protein POPTR_0005s07290g [Populus trichocarpa]
3 Hb_153161_010 0.1711075733 - - phospholipid-transporting atpase, putative [Ricinus communis]
4 Hb_003060_050 0.1876472924 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
5 Hb_001817_130 0.1900600208 - - PREDICTED: poly [ADP-ribose] polymerase 1 isoform X3 [Cucumis melo]
6 Hb_178127_010 0.1911806605 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
7 Hb_001565_020 0.193961903 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial, partial [Jatropha curcas]
8 Hb_004074_030 0.1942255341 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_007481_030 0.1977111248 - - PREDICTED: uncharacterized protein LOC105628433 [Jatropha curcas]
10 Hb_000175_350 0.2032769337 - - phopholipase d alpha, putative [Ricinus communis]
11 Hb_001622_010 0.2034035826 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_128695_030 0.2046753591 - - heat shock protein, putative [Ricinus communis]
13 Hb_002471_020 0.2064615615 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
14 Hb_065379_010 0.2084710834 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
15 Hb_002774_150 0.2088862469 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
16 Hb_001114_020 0.2098315421 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
17 Hb_021576_140 0.2160095211 - - PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like [Jatropha curcas]
18 Hb_005464_030 0.2160936928 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_009193_110 0.2168787176 - - PREDICTED: wall-associated receptor kinase-like 1 isoform X1 [Jatropha curcas]
20 Hb_000599_130 0.2182185543 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_003914_030 Hb_003914_030 Hb_003096_040 Hb_003096_040 Hb_003914_030--Hb_003096_040 Hb_153161_010 Hb_153161_010 Hb_003914_030--Hb_153161_010 Hb_003060_050 Hb_003060_050 Hb_003914_030--Hb_003060_050 Hb_001817_130 Hb_001817_130 Hb_003914_030--Hb_001817_130 Hb_178127_010 Hb_178127_010 Hb_003914_030--Hb_178127_010 Hb_001565_020 Hb_001565_020 Hb_003914_030--Hb_001565_020 Hb_031527_070 Hb_031527_070 Hb_003096_040--Hb_031527_070 Hb_010261_010 Hb_010261_010 Hb_003096_040--Hb_010261_010 Hb_003096_040--Hb_153161_010 Hb_000175_350 Hb_000175_350 Hb_003096_040--Hb_000175_350 Hb_003096_040--Hb_178127_010 Hb_005510_010 Hb_005510_010 Hb_003096_040--Hb_005510_010 Hb_153161_010--Hb_001565_020 Hb_153161_010--Hb_178127_010 Hb_128695_030 Hb_128695_030 Hb_153161_010--Hb_128695_030 Hb_021530_010 Hb_021530_010 Hb_153161_010--Hb_021530_010 Hb_002942_110 Hb_002942_110 Hb_153161_010--Hb_002942_110 Hb_097646_010 Hb_097646_010 Hb_003060_050--Hb_097646_010 Hb_003854_020 Hb_003854_020 Hb_003060_050--Hb_003854_020 Hb_022880_020 Hb_022880_020 Hb_003060_050--Hb_022880_020 Hb_003001_040 Hb_003001_040 Hb_003060_050--Hb_003001_040 Hb_001103_070 Hb_001103_070 Hb_003060_050--Hb_001103_070 Hb_002471_020 Hb_002471_020 Hb_001817_130--Hb_002471_020 Hb_001114_020 Hb_001114_020 Hb_001817_130--Hb_001114_020 Hb_000165_120 Hb_000165_120 Hb_001817_130--Hb_000165_120 Hb_087587_010 Hb_087587_010 Hb_001817_130--Hb_087587_010 Hb_001091_030 Hb_001091_030 Hb_001817_130--Hb_001091_030 Hb_178127_010--Hb_001565_020 Hb_178127_010--Hb_128695_030 Hb_005000_300 Hb_005000_300 Hb_178127_010--Hb_005000_300 Hb_000120_420 Hb_000120_420 Hb_178127_010--Hb_000120_420 Hb_018301_010 Hb_018301_010 Hb_178127_010--Hb_018301_010 Hb_011909_060 Hb_011909_060 Hb_178127_010--Hb_011909_060 Hb_001565_020--Hb_128695_030 Hb_001454_220 Hb_001454_220 Hb_001565_020--Hb_001454_220 Hb_000422_110 Hb_000422_110 Hb_001565_020--Hb_000422_110 Hb_001565_060 Hb_001565_060 Hb_001565_020--Hb_001565_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47211 4.89414 1.43432 1.16568 2.37944 1.21916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0177223 0.0139454 0.0265836 0.819607 0.918862

CAGE analysis