Hb_002471_020

Information

Type -
Description -
Location Contig2471: 13979-20629
Sequence    

Annotation

kegg
ID rcu:RCOM_0778090
description PLE, putative
nr
ID XP_012072381.1
description PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
swissprot
ID Q9SIS3
description 65-kDa microtubule-associated protein 6 OS=Arabidopsis thaliana GN=MAP65-6 PE=1 SV=1
trembl
ID A0A067KPX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04820 PE=4 SV=1
Gene Ontology
ID GO:0008017
description 65-kda microtubule-associated protein 6-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25639: 13923-20327 , PASA_asmbl_25640: 15394-15541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_020 0.0 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
2 Hb_000189_470 0.149896696 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
3 Hb_001817_130 0.1500608525 - - PREDICTED: poly [ADP-ribose] polymerase 1 isoform X3 [Cucumis melo]
4 Hb_002368_030 0.1556493252 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
5 Hb_003126_020 0.1627902354 - - Oligopeptide transporter, putative [Ricinus communis]
6 Hb_159411_010 0.1711148642 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
7 Hb_001409_050 0.172096091 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_007259_020 0.1722433336 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
9 Hb_012539_030 0.1731636668 - - PREDICTED: uncharacterized protein LOC105638247 [Jatropha curcas]
10 Hb_089100_040 0.1740636673 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
11 Hb_002685_030 0.175019216 - - PREDICTED: protein SMG7L [Jatropha curcas]
12 Hb_009897_010 0.175745444 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
13 Hb_087587_010 0.1762201321 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
14 Hb_002774_150 0.1793499845 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
15 Hb_000362_090 0.1795526001 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
16 Hb_000197_230 0.1824285201 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
17 Hb_052117_010 0.1856384593 - - kinase, putative [Ricinus communis]
18 Hb_020178_050 0.1858363591 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
19 Hb_002739_070 0.1870917806 - - hypothetical protein B456_002G169900 [Gossypium raimondii]
20 Hb_002475_130 0.1871242425 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_002471_020 Hb_002471_020 Hb_000189_470 Hb_000189_470 Hb_002471_020--Hb_000189_470 Hb_001817_130 Hb_001817_130 Hb_002471_020--Hb_001817_130 Hb_002368_030 Hb_002368_030 Hb_002471_020--Hb_002368_030 Hb_003126_020 Hb_003126_020 Hb_002471_020--Hb_003126_020 Hb_159411_010 Hb_159411_010 Hb_002471_020--Hb_159411_010 Hb_001409_050 Hb_001409_050 Hb_002471_020--Hb_001409_050 Hb_089100_040 Hb_089100_040 Hb_000189_470--Hb_089100_040 Hb_122273_020 Hb_122273_020 Hb_000189_470--Hb_122273_020 Hb_002918_320 Hb_002918_320 Hb_000189_470--Hb_002918_320 Hb_002005_120 Hb_002005_120 Hb_000189_470--Hb_002005_120 Hb_001699_150 Hb_001699_150 Hb_000189_470--Hb_001699_150 Hb_000413_250 Hb_000413_250 Hb_000189_470--Hb_000413_250 Hb_001114_020 Hb_001114_020 Hb_001817_130--Hb_001114_020 Hb_000165_120 Hb_000165_120 Hb_001817_130--Hb_000165_120 Hb_087587_010 Hb_087587_010 Hb_001817_130--Hb_087587_010 Hb_001091_030 Hb_001091_030 Hb_001817_130--Hb_001091_030 Hb_003914_030 Hb_003914_030 Hb_001817_130--Hb_003914_030 Hb_002774_150 Hb_002774_150 Hb_002368_030--Hb_002774_150 Hb_001662_170 Hb_001662_170 Hb_002368_030--Hb_001662_170 Hb_000307_010 Hb_000307_010 Hb_002368_030--Hb_000307_010 Hb_172421_010 Hb_172421_010 Hb_002368_030--Hb_172421_010 Hb_002534_050 Hb_002534_050 Hb_002368_030--Hb_002534_050 Hb_033642_070 Hb_033642_070 Hb_003126_020--Hb_033642_070 Hb_001053_200 Hb_001053_200 Hb_003126_020--Hb_001053_200 Hb_003126_020--Hb_001662_170 Hb_002233_070 Hb_002233_070 Hb_003126_020--Hb_002233_070 Hb_158696_010 Hb_158696_010 Hb_003126_020--Hb_158696_010 Hb_004106_010 Hb_004106_010 Hb_003126_020--Hb_004106_010 Hb_000197_230 Hb_000197_230 Hb_159411_010--Hb_000197_230 Hb_005880_010 Hb_005880_010 Hb_159411_010--Hb_005880_010 Hb_001369_160 Hb_001369_160 Hb_159411_010--Hb_001369_160 Hb_000083_130 Hb_000083_130 Hb_159411_010--Hb_000083_130 Hb_146510_010 Hb_146510_010 Hb_159411_010--Hb_146510_010 Hb_001488_280 Hb_001488_280 Hb_159411_010--Hb_001488_280 Hb_005724_050 Hb_005724_050 Hb_001409_050--Hb_005724_050 Hb_001409_050--Hb_001053_200 Hb_003216_050 Hb_003216_050 Hb_001409_050--Hb_003216_050 Hb_000732_230 Hb_000732_230 Hb_001409_050--Hb_000732_230 Hb_001951_240 Hb_001951_240 Hb_001409_050--Hb_001951_240 Hb_000008_430 Hb_000008_430 Hb_001409_050--Hb_000008_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.68771 22.3215 5.1171 8.18982 3.43533 4.77186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.293368 0.0230858 0.0662303 7.50874 6.77137

CAGE analysis