Hb_022880_020

Information

Type -
Description -
Location Contig22880: 11837-13290
Sequence    

Annotation

kegg
ID pop:POPTR_0001s16160g
description lipase class 3 family protein
nr
ID XP_012069226.1
description PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
swissprot
ID O59952
description Lipase OS=Thermomyces lanuginosus GN=LIP PE=1 SV=1
trembl
ID A0A067KWS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24611 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022880_020 0.0 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
2 Hb_003060_050 0.1975927852 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
3 Hb_000123_030 0.2034710113 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
4 Hb_004074_030 0.2150647442 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000796_050 0.2229954971 - - galactinol synthase [Manihot esculenta]
6 Hb_001178_040 0.2354963729 desease resistance Gene Name: ABC_trans_N PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
7 Hb_001950_020 0.2378636354 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
8 Hb_162074_010 0.2428332643 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
9 Hb_002368_030 0.2560563366 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
10 Hb_049958_010 0.2596718037 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
11 Hb_116685_010 0.2607810906 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
12 Hb_097646_010 0.2623409889 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
13 Hb_003914_030 0.2646500459 - - -
14 Hb_126506_010 0.2659671501 - - Disease resistance protein RPS5, putative [Ricinus communis]
15 Hb_005736_050 0.2664134041 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
16 Hb_002774_150 0.2664477706 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
17 Hb_155642_010 0.2672730143 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
18 Hb_006420_020 0.2682143381 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
19 Hb_000483_230 0.2707201202 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
20 Hb_004970_180 0.2716565095 - - -

Gene co-expression network

sample Hb_022880_020 Hb_022880_020 Hb_003060_050 Hb_003060_050 Hb_022880_020--Hb_003060_050 Hb_000123_030 Hb_000123_030 Hb_022880_020--Hb_000123_030 Hb_004074_030 Hb_004074_030 Hb_022880_020--Hb_004074_030 Hb_000796_050 Hb_000796_050 Hb_022880_020--Hb_000796_050 Hb_001178_040 Hb_001178_040 Hb_022880_020--Hb_001178_040 Hb_001950_020 Hb_001950_020 Hb_022880_020--Hb_001950_020 Hb_097646_010 Hb_097646_010 Hb_003060_050--Hb_097646_010 Hb_003914_030 Hb_003914_030 Hb_003060_050--Hb_003914_030 Hb_003854_020 Hb_003854_020 Hb_003060_050--Hb_003854_020 Hb_003001_040 Hb_003001_040 Hb_003060_050--Hb_003001_040 Hb_001103_070 Hb_001103_070 Hb_003060_050--Hb_001103_070 Hb_000123_030--Hb_003854_020 Hb_000123_020 Hb_000123_020 Hb_000123_030--Hb_000123_020 Hb_059641_010 Hb_059641_010 Hb_000123_030--Hb_059641_010 Hb_049958_010 Hb_049958_010 Hb_000123_030--Hb_049958_010 Hb_002471_020 Hb_002471_020 Hb_000123_030--Hb_002471_020 Hb_044086_010 Hb_044086_010 Hb_004074_030--Hb_044086_010 Hb_002368_030 Hb_002368_030 Hb_004074_030--Hb_002368_030 Hb_002774_150 Hb_002774_150 Hb_004074_030--Hb_002774_150 Hb_004074_030--Hb_003914_030 Hb_000991_050 Hb_000991_050 Hb_004074_030--Hb_000991_050 Hb_065379_010 Hb_065379_010 Hb_004074_030--Hb_065379_010 Hb_000302_300 Hb_000302_300 Hb_000796_050--Hb_000302_300 Hb_020247_050 Hb_020247_050 Hb_000796_050--Hb_020247_050 Hb_002843_220 Hb_002843_220 Hb_000796_050--Hb_002843_220 Hb_006573_010 Hb_006573_010 Hb_000796_050--Hb_006573_010 Hb_000796_050--Hb_000991_050 Hb_001699_030 Hb_001699_030 Hb_001178_040--Hb_001699_030 Hb_154538_010 Hb_154538_010 Hb_001178_040--Hb_154538_010 Hb_003175_090 Hb_003175_090 Hb_001178_040--Hb_003175_090 Hb_000836_210 Hb_000836_210 Hb_001178_040--Hb_000836_210 Hb_000342_140 Hb_000342_140 Hb_001178_040--Hb_000342_140 Hb_003637_020 Hb_003637_020 Hb_001178_040--Hb_003637_020 Hb_000834_240 Hb_000834_240 Hb_001950_020--Hb_000834_240 Hb_069841_010 Hb_069841_010 Hb_001950_020--Hb_069841_010 Hb_001114_230 Hb_001114_230 Hb_001950_020--Hb_001114_230 Hb_012258_020 Hb_012258_020 Hb_001950_020--Hb_012258_020 Hb_001196_080 Hb_001196_080 Hb_001950_020--Hb_001196_080 Hb_005568_130 Hb_005568_130 Hb_001950_020--Hb_005568_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0626342 0.324232 0.043234 0.111819 0.0722801 0.122356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0714782

CAGE analysis