Hb_000123_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig123: 19792-20736
Sequence    

Annotation

kegg
ID vvi:100254907
description probable disease resistance protein At1g61190
nr
ID XP_010660299.1
description PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
swissprot
ID P60838
description Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1
trembl
ID F6H630
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g00260 PE=4 SV=1
Gene Ontology
ID GO:0032550
description nb-arc domain-containing disease resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
2 Hb_000123_030 0.1983674637 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_018118_020 0.2330258215 - - unnamed protein product [Vitis vinifera]
4 Hb_002737_020 0.2338298609 - - metallothionein [Bruguiera gymnorhiza]
5 Hb_007846_040 0.2434669244 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
6 Hb_006913_050 0.2553681986 - - -
7 Hb_059641_010 0.2637185815 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
8 Hb_090545_010 0.2639940163 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
9 Hb_009848_020 0.2648802468 - - hypothetical protein VITISV_026702 [Vitis vinifera]
10 Hb_084470_010 0.2689264556 - - Disease resistance protein RPS5, putative [Ricinus communis]
11 Hb_003854_020 0.2757817333 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
12 Hb_005715_020 0.2784153037 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
13 Hb_049958_010 0.2827662611 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
14 Hb_003813_080 0.2927688369 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
15 Hb_126506_010 0.2933268158 - - Disease resistance protein RPS5, putative [Ricinus communis]
16 Hb_000217_060 0.3005825173 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_097433_020 0.303481563 - - ATP-binding cassette transporter, putative [Ricinus communis]
18 Hb_009710_020 0.3046220967 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
19 Hb_001907_100 0.3050692172 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
20 Hb_005147_050 0.3057321141 - - PREDICTED: ankyrin-2-like [Citrus sinensis]

Gene co-expression network

sample Hb_000123_020 Hb_000123_020 Hb_000123_030 Hb_000123_030 Hb_000123_020--Hb_000123_030 Hb_018118_020 Hb_018118_020 Hb_000123_020--Hb_018118_020 Hb_002737_020 Hb_002737_020 Hb_000123_020--Hb_002737_020 Hb_007846_040 Hb_007846_040 Hb_000123_020--Hb_007846_040 Hb_006913_050 Hb_006913_050 Hb_000123_020--Hb_006913_050 Hb_059641_010 Hb_059641_010 Hb_000123_020--Hb_059641_010 Hb_003854_020 Hb_003854_020 Hb_000123_030--Hb_003854_020 Hb_000123_030--Hb_059641_010 Hb_022880_020 Hb_022880_020 Hb_000123_030--Hb_022880_020 Hb_049958_010 Hb_049958_010 Hb_000123_030--Hb_049958_010 Hb_002471_020 Hb_002471_020 Hb_000123_030--Hb_002471_020 Hb_159307_010 Hb_159307_010 Hb_018118_020--Hb_159307_010 Hb_018118_020--Hb_002737_020 Hb_002370_040 Hb_002370_040 Hb_018118_020--Hb_002370_040 Hb_005715_020 Hb_005715_020 Hb_018118_020--Hb_005715_020 Hb_116638_010 Hb_116638_010 Hb_018118_020--Hb_116638_010 Hb_084470_010 Hb_084470_010 Hb_018118_020--Hb_084470_010 Hb_002737_020--Hb_000123_030 Hb_076233_020 Hb_076233_020 Hb_002737_020--Hb_076233_020 Hb_097433_020 Hb_097433_020 Hb_002737_020--Hb_097433_020 Hb_003772_020 Hb_003772_020 Hb_002737_020--Hb_003772_020 Hb_000640_150 Hb_000640_150 Hb_007846_040--Hb_000640_150 Hb_000003_390 Hb_000003_390 Hb_007846_040--Hb_000003_390 Hb_001907_100 Hb_001907_100 Hb_007846_040--Hb_001907_100 Hb_002232_150 Hb_002232_150 Hb_007846_040--Hb_002232_150 Hb_054885_020 Hb_054885_020 Hb_007846_040--Hb_054885_020 Hb_007846_040--Hb_059641_010 Hb_090545_010 Hb_090545_010 Hb_006913_050--Hb_090545_010 Hb_006913_050--Hb_003854_020 Hb_026337_010 Hb_026337_010 Hb_006913_050--Hb_026337_010 Hb_006913_050--Hb_000123_030 Hb_141212_010 Hb_141212_010 Hb_006913_050--Hb_141212_010 Hb_154538_010 Hb_154538_010 Hb_006913_050--Hb_154538_010 Hb_059641_010--Hb_049958_010 Hb_000571_150 Hb_000571_150 Hb_059641_010--Hb_000571_150 Hb_169329_010 Hb_169329_010 Hb_059641_010--Hb_169329_010 Hb_059641_010--Hb_003854_020 Hb_144550_020 Hb_144550_020 Hb_059641_010--Hb_144550_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.475078 1.04702 0.109847 0.441122 0 1.12179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.258458 0.0871585

CAGE analysis