Hb_005715_020

Information

Type -
Description -
Location Contig5715: 28752-34547
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23620g
description POPTRDRAFT_1092563; GTP-binding family protein
nr
ID XP_012080999.1
description PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
swissprot
ID O49841
description Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1
trembl
ID A0A067K2Q1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16180 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rabc2a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49377: 28751-33218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005715_020 0.0 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
2 Hb_007021_030 0.2104351582 - - conserved hypothetical protein [Ricinus communis]
3 Hb_018118_020 0.2274108651 - - unnamed protein product [Vitis vinifera]
4 Hb_010997_100 0.235790014 transcription factor TF Family: mTERF -
5 Hb_004650_090 0.2428363982 - - -
6 Hb_097433_020 0.2487889062 - - ATP-binding cassette transporter, putative [Ricinus communis]
7 Hb_001396_150 0.2561046046 transcription factor TF Family: M-type hypothetical protein POPTR_0001s13660g [Populus trichocarpa]
8 Hb_065395_010 0.2752074116 - - hypothetical protein POPTR_0014s14760g, partial [Populus trichocarpa]
9 Hb_000123_030 0.2776466951 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
10 Hb_000123_020 0.2784153037 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
11 Hb_002737_020 0.292608435 - - metallothionein [Bruguiera gymnorhiza]
12 Hb_049160_010 0.2929126797 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
13 Hb_000032_530 0.29632678 - - -
14 Hb_017651_010 0.298346831 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_007978_020 0.3057527447 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
16 Hb_084470_010 0.306177112 - - Disease resistance protein RPS5, putative [Ricinus communis]
17 Hb_159307_010 0.308216394 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
18 Hb_000062_500 0.3127742496 - - PREDICTED: urease-like [Zea mays]
19 Hb_000003_180 0.3139151407 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001114_230 0.3141091386 - - -

Gene co-expression network

sample Hb_005715_020 Hb_005715_020 Hb_007021_030 Hb_007021_030 Hb_005715_020--Hb_007021_030 Hb_018118_020 Hb_018118_020 Hb_005715_020--Hb_018118_020 Hb_010997_100 Hb_010997_100 Hb_005715_020--Hb_010997_100 Hb_004650_090 Hb_004650_090 Hb_005715_020--Hb_004650_090 Hb_097433_020 Hb_097433_020 Hb_005715_020--Hb_097433_020 Hb_001396_150 Hb_001396_150 Hb_005715_020--Hb_001396_150 Hb_004738_050 Hb_004738_050 Hb_007021_030--Hb_004738_050 Hb_065395_010 Hb_065395_010 Hb_007021_030--Hb_065395_010 Hb_000217_050 Hb_000217_050 Hb_007021_030--Hb_000217_050 Hb_007021_030--Hb_004650_090 Hb_007021_030--Hb_001396_150 Hb_159307_010 Hb_159307_010 Hb_018118_020--Hb_159307_010 Hb_002737_020 Hb_002737_020 Hb_018118_020--Hb_002737_020 Hb_002370_040 Hb_002370_040 Hb_018118_020--Hb_002370_040 Hb_116638_010 Hb_116638_010 Hb_018118_020--Hb_116638_010 Hb_084470_010 Hb_084470_010 Hb_018118_020--Hb_084470_010 Hb_000032_530 Hb_000032_530 Hb_010997_100--Hb_000032_530 Hb_120384_010 Hb_120384_010 Hb_010997_100--Hb_120384_010 Hb_000062_500 Hb_000062_500 Hb_010997_100--Hb_000062_500 Hb_003647_010 Hb_003647_010 Hb_010997_100--Hb_003647_010 Hb_032018_010 Hb_032018_010 Hb_010997_100--Hb_032018_010 Hb_000580_040 Hb_000580_040 Hb_004650_090--Hb_000580_040 Hb_004650_090--Hb_000062_500 Hb_007545_160 Hb_007545_160 Hb_004650_090--Hb_007545_160 Hb_043950_010 Hb_043950_010 Hb_004650_090--Hb_043950_010 Hb_173423_010 Hb_173423_010 Hb_004650_090--Hb_173423_010 Hb_057217_010 Hb_057217_010 Hb_097433_020--Hb_057217_010 Hb_000334_200 Hb_000334_200 Hb_097433_020--Hb_000334_200 Hb_097433_020--Hb_002737_020 Hb_097433_020--Hb_018118_020 Hb_050495_010 Hb_050495_010 Hb_097433_020--Hb_050495_010 Hb_157846_010 Hb_157846_010 Hb_001396_150--Hb_157846_010 Hb_002235_140 Hb_002235_140 Hb_001396_150--Hb_002235_140 Hb_000217_060 Hb_000217_060 Hb_001396_150--Hb_000217_060 Hb_000375_370 Hb_000375_370 Hb_001396_150--Hb_000375_370 Hb_049160_010 Hb_049160_010 Hb_001396_150--Hb_049160_010 Hb_114261_010 Hb_114261_010 Hb_001396_150--Hb_114261_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36907 4.97379 0.500207 0.236565 0.454661 7.65488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0820469 0.0644992 0 0.630113 1.01924

CAGE analysis