Hb_065395_010

Information

Type -
Description -
Location Contig65395: 1915-5555
Sequence    

Annotation

kegg
ID pop:POPTR_0014s14760g
description POPTRDRAFT_572930; hypothetical protein
nr
ID XP_002320451.2
description hypothetical protein POPTR_0014s14760g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IAC8
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0014s14760g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52623: 4648-4871
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065395_010 0.0 - - hypothetical protein POPTR_0014s14760g, partial [Populus trichocarpa]
2 Hb_000217_050 0.2625192795 - - elongation factor 1-alpha, putative [Ricinus communis]
3 Hb_007021_030 0.2710105176 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005715_020 0.2752074116 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
5 Hb_074701_010 0.279929853 - - -
6 Hb_138652_020 0.2896393868 - - -
7 Hb_057746_010 0.3011550014 - - -
8 Hb_004650_090 0.3080437339 - - -
9 Hb_111834_020 0.309558815 - - PREDICTED: protein phosphatase methylesterase 1 [Jatropha curcas]
10 Hb_018118_020 0.3119264337 - - unnamed protein product [Vitis vinifera]
11 Hb_034667_020 0.3121802758 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005504_010 0.3179068397 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
13 Hb_004429_030 0.3188738695 - - hypothetical protein POPTR_0010s16560g [Populus trichocarpa]
14 Hb_004317_050 0.3253987122 - - -
15 Hb_001023_020 0.3324422424 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
16 Hb_003772_020 0.3364783863 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
17 Hb_000002_320 0.3374364668 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
18 Hb_004738_050 0.3393347893 - - F-box/leucine rich repeat protein, putative [Ricinus communis]
19 Hb_001418_060 0.3430621768 - - -
20 Hb_001396_150 0.3440994684 transcription factor TF Family: M-type hypothetical protein POPTR_0001s13660g [Populus trichocarpa]

Gene co-expression network

sample Hb_065395_010 Hb_065395_010 Hb_000217_050 Hb_000217_050 Hb_065395_010--Hb_000217_050 Hb_007021_030 Hb_007021_030 Hb_065395_010--Hb_007021_030 Hb_005715_020 Hb_005715_020 Hb_065395_010--Hb_005715_020 Hb_074701_010 Hb_074701_010 Hb_065395_010--Hb_074701_010 Hb_138652_020 Hb_138652_020 Hb_065395_010--Hb_138652_020 Hb_057746_010 Hb_057746_010 Hb_065395_010--Hb_057746_010 Hb_094647_010 Hb_094647_010 Hb_000217_050--Hb_094647_010 Hb_087762_010 Hb_087762_010 Hb_000217_050--Hb_087762_010 Hb_000939_010 Hb_000939_010 Hb_000217_050--Hb_000939_010 Hb_000270_500 Hb_000270_500 Hb_000217_050--Hb_000270_500 Hb_000193_150 Hb_000193_150 Hb_000217_050--Hb_000193_150 Hb_007021_030--Hb_005715_020 Hb_004738_050 Hb_004738_050 Hb_007021_030--Hb_004738_050 Hb_007021_030--Hb_000217_050 Hb_004650_090 Hb_004650_090 Hb_007021_030--Hb_004650_090 Hb_001396_150 Hb_001396_150 Hb_007021_030--Hb_001396_150 Hb_018118_020 Hb_018118_020 Hb_005715_020--Hb_018118_020 Hb_010997_100 Hb_010997_100 Hb_005715_020--Hb_010997_100 Hb_005715_020--Hb_004650_090 Hb_097433_020 Hb_097433_020 Hb_005715_020--Hb_097433_020 Hb_005715_020--Hb_001396_150 Hb_004429_030 Hb_004429_030 Hb_074701_010--Hb_004429_030 Hb_074701_010--Hb_057746_010 Hb_001711_070 Hb_001711_070 Hb_074701_010--Hb_001711_070 Hb_111834_010 Hb_111834_010 Hb_074701_010--Hb_111834_010 Hb_001023_020 Hb_001023_020 Hb_074701_010--Hb_001023_020 Hb_138652_020--Hb_057746_010 Hb_037605_010 Hb_037605_010 Hb_138652_020--Hb_037605_010 Hb_012194_010 Hb_012194_010 Hb_138652_020--Hb_012194_010 Hb_006275_030 Hb_006275_030 Hb_138652_020--Hb_006275_030 Hb_000574_020 Hb_000574_020 Hb_138652_020--Hb_000574_020 Hb_002463_080 Hb_002463_080 Hb_138652_020--Hb_002463_080 Hb_004317_050 Hb_004317_050 Hb_057746_010--Hb_004317_050 Hb_165078_010 Hb_165078_010 Hb_057746_010--Hb_165078_010 Hb_002490_040 Hb_002490_040 Hb_057746_010--Hb_002490_040 Hb_000563_290 Hb_000563_290 Hb_057746_010--Hb_000563_290 Hb_000195_050 Hb_000195_050 Hb_057746_010--Hb_000195_050 Hb_038675_010 Hb_038675_010 Hb_057746_010--Hb_038675_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.97701 3.83459 2.01152 0 0 16.8287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.878117 1.6031

CAGE analysis