Hb_004429_030

Information

Type -
Description -
Location Contig4429: 22056-22817
Sequence    

Annotation

kegg
ID pop:POPTR_0010s16560g
description POPTRDRAFT_566925; hypothetical protein
nr
ID XP_002316085.2
description hypothetical protein POPTR_0010s16560g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HXJ1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s16560g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004429_030 0.0 - - hypothetical protein POPTR_0010s16560g [Populus trichocarpa]
2 Hb_074701_010 0.1905163203 - - -
3 Hb_000252_250 0.249428152 - - unknown [Lotus japonicus]
4 Hb_114261_010 0.2773225482 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
5 Hb_010317_030 0.2866500152 - - unknown [Picea sitchensis]
6 Hb_001023_020 0.2873463949 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
7 Hb_000270_500 0.2875984204 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
8 Hb_002259_040 0.2915414357 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_001396_150 0.2931213273 transcription factor TF Family: M-type hypothetical protein POPTR_0001s13660g [Populus trichocarpa]
10 Hb_135442_010 0.2958921516 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
11 Hb_007827_020 0.2967970309 - - -
12 Hb_001418_060 0.2972899032 - - -
13 Hb_094647_010 0.2983601708 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Jatropha curcas]
14 Hb_057746_010 0.298612065 - - -
15 Hb_000808_240 0.301446126 - - -
16 Hb_018118_020 0.3022329643 - - unnamed protein product [Vitis vinifera]
17 Hb_000160_200 0.3060784094 - - PREDICTED: uncharacterized protein LOC105648226 [Jatropha curcas]
18 Hb_139859_010 0.3080365923 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
19 Hb_004883_060 0.314916502 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
20 Hb_084858_010 0.315982316 - - Uncharacterized protein isoform 3 [Theobroma cacao]

Gene co-expression network

sample Hb_004429_030 Hb_004429_030 Hb_074701_010 Hb_074701_010 Hb_004429_030--Hb_074701_010 Hb_000252_250 Hb_000252_250 Hb_004429_030--Hb_000252_250 Hb_114261_010 Hb_114261_010 Hb_004429_030--Hb_114261_010 Hb_010317_030 Hb_010317_030 Hb_004429_030--Hb_010317_030 Hb_001023_020 Hb_001023_020 Hb_004429_030--Hb_001023_020 Hb_000270_500 Hb_000270_500 Hb_004429_030--Hb_000270_500 Hb_057746_010 Hb_057746_010 Hb_074701_010--Hb_057746_010 Hb_001711_070 Hb_001711_070 Hb_074701_010--Hb_001711_070 Hb_111834_010 Hb_111834_010 Hb_074701_010--Hb_111834_010 Hb_074701_010--Hb_001023_020 Hb_065395_010 Hb_065395_010 Hb_074701_010--Hb_065395_010 Hb_004137_070 Hb_004137_070 Hb_000252_250--Hb_004137_070 Hb_011206_010 Hb_011206_010 Hb_000252_250--Hb_011206_010 Hb_030328_010 Hb_030328_010 Hb_000252_250--Hb_030328_010 Hb_139859_010 Hb_139859_010 Hb_000252_250--Hb_139859_010 Hb_004883_060 Hb_004883_060 Hb_000252_250--Hb_004883_060 Hb_110364_010 Hb_110364_010 Hb_000252_250--Hb_110364_010 Hb_003929_060 Hb_003929_060 Hb_114261_010--Hb_003929_060 Hb_000061_040 Hb_000061_040 Hb_114261_010--Hb_000061_040 Hb_000160_200 Hb_000160_200 Hb_114261_010--Hb_000160_200 Hb_114261_010--Hb_001023_020 Hb_001396_150 Hb_001396_150 Hb_114261_010--Hb_001396_150 Hb_114261_010--Hb_000270_500 Hb_024272_010 Hb_024272_010 Hb_010317_030--Hb_024272_010 Hb_007827_020 Hb_007827_020 Hb_010317_030--Hb_007827_020 Hb_007603_010 Hb_007603_010 Hb_010317_030--Hb_007603_010 Hb_071869_010 Hb_071869_010 Hb_010317_030--Hb_071869_010 Hb_005656_060 Hb_005656_060 Hb_010317_030--Hb_005656_060 Hb_001983_010 Hb_001983_010 Hb_010317_030--Hb_001983_010 Hb_001023_020--Hb_057746_010 Hb_000002_320 Hb_000002_320 Hb_001023_020--Hb_000002_320 Hb_034667_020 Hb_034667_020 Hb_001023_020--Hb_034667_020 Hb_001023_020--Hb_007827_020 Hb_001023_020--Hb_000270_500 Hb_176117_010 Hb_176117_010 Hb_000270_500--Hb_176117_010 Hb_181320_010 Hb_181320_010 Hb_000270_500--Hb_181320_010 Hb_094647_010 Hb_094647_010 Hb_000270_500--Hb_094647_010 Hb_080530_020 Hb_080530_020 Hb_000270_500--Hb_080530_020 Hb_005016_150 Hb_005016_150 Hb_000270_500--Hb_005016_150 Hb_000270_500--Hb_007827_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.414514 0.142013 0.0971479 0.0296221 0.0628141 1.11021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.101963 0.275543 0

CAGE analysis