Hb_074701_010

Information

Type -
Description -
Location Contig74701: 590-1814
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56695: 1153-1291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074701_010 0.0 - - -
2 Hb_004429_030 0.1905163203 - - hypothetical protein POPTR_0010s16560g [Populus trichocarpa]
3 Hb_057746_010 0.232717848 - - -
4 Hb_001711_070 0.2495509739 - - -
5 Hb_111834_010 0.2512053619 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
6 Hb_001023_020 0.2513436513 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
7 Hb_065395_010 0.279929853 - - hypothetical protein POPTR_0014s14760g, partial [Populus trichocarpa]
8 Hb_001418_060 0.2842384042 - - -
9 Hb_034667_020 0.2977993325 - - conserved hypothetical protein [Ricinus communis]
10 Hb_114261_010 0.3031865783 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
11 Hb_037605_010 0.3067746552 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
12 Hb_111834_020 0.3123130282 - - PREDICTED: protein phosphatase methylesterase 1 [Jatropha curcas]
13 Hb_080530_020 0.3126002925 - - -
14 Hb_004650_090 0.3136798176 - - -
15 Hb_138652_020 0.3167201345 - - -
16 Hb_000270_500 0.3183902062 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
17 Hb_001385_090 0.3197574649 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
18 Hb_001396_150 0.3225065034 transcription factor TF Family: M-type hypothetical protein POPTR_0001s13660g [Populus trichocarpa]
19 Hb_000189_420 0.3236255564 - - PREDICTED: uncharacterized protein LOC105647665 [Jatropha curcas]
20 Hb_002249_110 0.3236418275 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_074701_010 Hb_074701_010 Hb_004429_030 Hb_004429_030 Hb_074701_010--Hb_004429_030 Hb_057746_010 Hb_057746_010 Hb_074701_010--Hb_057746_010 Hb_001711_070 Hb_001711_070 Hb_074701_010--Hb_001711_070 Hb_111834_010 Hb_111834_010 Hb_074701_010--Hb_111834_010 Hb_001023_020 Hb_001023_020 Hb_074701_010--Hb_001023_020 Hb_065395_010 Hb_065395_010 Hb_074701_010--Hb_065395_010 Hb_000252_250 Hb_000252_250 Hb_004429_030--Hb_000252_250 Hb_114261_010 Hb_114261_010 Hb_004429_030--Hb_114261_010 Hb_010317_030 Hb_010317_030 Hb_004429_030--Hb_010317_030 Hb_004429_030--Hb_001023_020 Hb_000270_500 Hb_000270_500 Hb_004429_030--Hb_000270_500 Hb_004317_050 Hb_004317_050 Hb_057746_010--Hb_004317_050 Hb_165078_010 Hb_165078_010 Hb_057746_010--Hb_165078_010 Hb_002490_040 Hb_002490_040 Hb_057746_010--Hb_002490_040 Hb_000563_290 Hb_000563_290 Hb_057746_010--Hb_000563_290 Hb_000195_050 Hb_000195_050 Hb_057746_010--Hb_000195_050 Hb_038675_010 Hb_038675_010 Hb_057746_010--Hb_038675_010 Hb_001711_070--Hb_001023_020 Hb_001711_070--Hb_004429_030 Hb_007218_090 Hb_007218_090 Hb_001711_070--Hb_007218_090 Hb_008887_010 Hb_008887_010 Hb_001711_070--Hb_008887_010 Hb_000219_070 Hb_000219_070 Hb_001711_070--Hb_000219_070 Hb_004282_030 Hb_004282_030 Hb_111834_010--Hb_004282_030 Hb_000004_140 Hb_000004_140 Hb_111834_010--Hb_000004_140 Hb_076583_010 Hb_076583_010 Hb_111834_010--Hb_076583_010 Hb_064951_010 Hb_064951_010 Hb_111834_010--Hb_064951_010 Hb_011794_020 Hb_011794_020 Hb_111834_010--Hb_011794_020 Hb_001023_020--Hb_057746_010 Hb_000002_320 Hb_000002_320 Hb_001023_020--Hb_000002_320 Hb_034667_020 Hb_034667_020 Hb_001023_020--Hb_034667_020 Hb_007827_020 Hb_007827_020 Hb_001023_020--Hb_007827_020 Hb_001023_020--Hb_114261_010 Hb_001023_020--Hb_000270_500 Hb_000217_050 Hb_000217_050 Hb_065395_010--Hb_000217_050 Hb_007021_030 Hb_007021_030 Hb_065395_010--Hb_007021_030 Hb_005715_020 Hb_005715_020 Hb_065395_010--Hb_005715_020 Hb_138652_020 Hb_138652_020 Hb_065395_010--Hb_138652_020 Hb_065395_010--Hb_057746_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.638298 0.219656 0.220403 0 0.211579 2.1438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.379209 0

CAGE analysis