Hb_008887_010

Information

Type -
Description -
Location Contig8887: 119-851
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008887_010 0.0 - - -
2 Hb_007218_090 0.0782673363 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
3 Hb_011179_040 0.1717155956 - - conserved hypothetical protein [Ricinus communis]
4 Hb_075570_010 0.2469271309 - - -
5 Hb_001935_180 0.2537560496 - - hypothetical protein VITISV_028082 [Vitis vinifera]
6 Hb_000007_310 0.2554096496 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
7 Hb_027998_030 0.2560567096 - - laccase, putative [Ricinus communis]
8 Hb_001241_040 0.2562031518 - - -
9 Hb_132629_010 0.2574067781 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
10 Hb_177627_010 0.2614565729 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
11 Hb_004307_040 0.2682360464 - - -
12 Hb_182310_010 0.2710049608 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
13 Hb_003494_260 0.2743152582 - - -
14 Hb_067345_050 0.2783523564 - - PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]
15 Hb_001892_160 0.27966491 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
16 Hb_001604_110 0.2834412692 - - -
17 Hb_156144_020 0.2846706316 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
18 Hb_000563_280 0.2896518349 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
19 Hb_000345_480 0.2898504672 - - cyclin-dependent protein kinase, putative [Ricinus communis]
20 Hb_001775_040 0.2914721505 - - -

Gene co-expression network

sample Hb_008887_010 Hb_008887_010 Hb_007218_090 Hb_007218_090 Hb_008887_010--Hb_007218_090 Hb_011179_040 Hb_011179_040 Hb_008887_010--Hb_011179_040 Hb_075570_010 Hb_075570_010 Hb_008887_010--Hb_075570_010 Hb_001935_180 Hb_001935_180 Hb_008887_010--Hb_001935_180 Hb_000007_310 Hb_000007_310 Hb_008887_010--Hb_000007_310 Hb_027998_030 Hb_027998_030 Hb_008887_010--Hb_027998_030 Hb_007218_090--Hb_011179_040 Hb_182310_010 Hb_182310_010 Hb_007218_090--Hb_182310_010 Hb_001241_040 Hb_001241_040 Hb_007218_090--Hb_001241_040 Hb_000563_280 Hb_000563_280 Hb_007218_090--Hb_000563_280 Hb_067345_050 Hb_067345_050 Hb_007218_090--Hb_067345_050 Hb_003108_010 Hb_003108_010 Hb_011179_040--Hb_003108_010 Hb_040562_010 Hb_040562_010 Hb_011179_040--Hb_040562_010 Hb_011179_040--Hb_027998_030 Hb_156144_020 Hb_156144_020 Hb_011179_040--Hb_156144_020 Hb_132629_010 Hb_132629_010 Hb_075570_010--Hb_132629_010 Hb_075570_010--Hb_000007_310 Hb_003494_260 Hb_003494_260 Hb_075570_010--Hb_003494_260 Hb_177627_010 Hb_177627_010 Hb_075570_010--Hb_177627_010 Hb_000153_040 Hb_000153_040 Hb_075570_010--Hb_000153_040 Hb_000345_480 Hb_000345_480 Hb_075570_010--Hb_000345_480 Hb_001741_100 Hb_001741_100 Hb_001935_180--Hb_001741_100 Hb_001935_180--Hb_007218_090 Hb_002326_060 Hb_002326_060 Hb_001935_180--Hb_002326_060 Hb_004460_020 Hb_004460_020 Hb_001935_180--Hb_004460_020 Hb_001935_180--Hb_067345_050 Hb_000007_310--Hb_132629_010 Hb_000007_310--Hb_177627_010 Hb_000007_310--Hb_003494_260 Hb_000153_020 Hb_000153_020 Hb_000007_310--Hb_000153_020 Hb_000007_310--Hb_000153_040 Hb_004307_040 Hb_004307_040 Hb_027998_030--Hb_004307_040 Hb_000175_530 Hb_000175_530 Hb_027998_030--Hb_000175_530 Hb_007634_020 Hb_007634_020 Hb_027998_030--Hb_007634_020 Hb_000580_060 Hb_000580_060 Hb_027998_030--Hb_000580_060 Hb_000559_050 Hb_000559_050 Hb_027998_030--Hb_000559_050 Hb_001892_160 Hb_001892_160 Hb_027998_030--Hb_001892_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.144544 0 0 0 0.136176 0.173103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.056581 0

CAGE analysis