Hb_001935_180

Information

Type -
Description -
Location Contig1935: 167062-173280
Sequence    

Annotation

kegg
ID pmum:103329714
description uncharacterized LOC103329714
nr
ID CAN78544.1
description hypothetical protein VITISV_028082 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B1A3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028082 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001935_180 0.0 - - hypothetical protein VITISV_028082 [Vitis vinifera]
2 Hb_001741_100 0.2427896854 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
3 Hb_007218_090 0.2439222993 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
4 Hb_008887_010 0.2537560496 - - -
5 Hb_002326_060 0.2541292666 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
6 Hb_004460_020 0.2614254347 - - chaperone protein DNAj, putative [Ricinus communis]
7 Hb_067345_050 0.2662246292 - - PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]
8 Hb_001159_210 0.2709469963 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
9 Hb_134732_010 0.2720621143 - - -
10 Hb_000038_150 0.2753345513 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
11 Hb_081636_010 0.2754440225 - - -
12 Hb_001135_270 0.2802173365 - - -
13 Hb_047661_010 0.2859777171 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
14 Hb_005799_030 0.2872507432 - - PREDICTED: uncharacterized protein LOC103926623 [Pyrus x bretschneideri]
15 Hb_005054_050 0.2894550036 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
16 Hb_075570_010 0.2895654243 - - -
17 Hb_000215_260 0.2924868151 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
18 Hb_156144_020 0.2974972087 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
19 Hb_066784_020 0.2975976923 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002374_560 0.2990846955 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like [Populus euphratica]

Gene co-expression network

sample Hb_001935_180 Hb_001935_180 Hb_001741_100 Hb_001741_100 Hb_001935_180--Hb_001741_100 Hb_007218_090 Hb_007218_090 Hb_001935_180--Hb_007218_090 Hb_008887_010 Hb_008887_010 Hb_001935_180--Hb_008887_010 Hb_002326_060 Hb_002326_060 Hb_001935_180--Hb_002326_060 Hb_004460_020 Hb_004460_020 Hb_001935_180--Hb_004460_020 Hb_067345_050 Hb_067345_050 Hb_001935_180--Hb_067345_050 Hb_002217_130 Hb_002217_130 Hb_001741_100--Hb_002217_130 Hb_002234_220 Hb_002234_220 Hb_001741_100--Hb_002234_220 Hb_001892_160 Hb_001892_160 Hb_001741_100--Hb_001892_160 Hb_000200_060 Hb_000200_060 Hb_001741_100--Hb_000200_060 Hb_156144_020 Hb_156144_020 Hb_001741_100--Hb_156144_020 Hb_000007_310 Hb_000007_310 Hb_001741_100--Hb_000007_310 Hb_007218_090--Hb_008887_010 Hb_011179_040 Hb_011179_040 Hb_007218_090--Hb_011179_040 Hb_182310_010 Hb_182310_010 Hb_007218_090--Hb_182310_010 Hb_001241_040 Hb_001241_040 Hb_007218_090--Hb_001241_040 Hb_000563_280 Hb_000563_280 Hb_007218_090--Hb_000563_280 Hb_007218_090--Hb_067345_050 Hb_008887_010--Hb_011179_040 Hb_075570_010 Hb_075570_010 Hb_008887_010--Hb_075570_010 Hb_008887_010--Hb_000007_310 Hb_027998_030 Hb_027998_030 Hb_008887_010--Hb_027998_030 Hb_001159_210 Hb_001159_210 Hb_002326_060--Hb_001159_210 Hb_134732_010 Hb_134732_010 Hb_002326_060--Hb_134732_010 Hb_000176_060 Hb_000176_060 Hb_002326_060--Hb_000176_060 Hb_000001_160 Hb_000001_160 Hb_002326_060--Hb_000001_160 Hb_001935_190 Hb_001935_190 Hb_002326_060--Hb_001935_190 Hb_000038_150 Hb_000038_150 Hb_002326_060--Hb_000038_150 Hb_001767_020 Hb_001767_020 Hb_004460_020--Hb_001767_020 Hb_004102_130 Hb_004102_130 Hb_004460_020--Hb_004102_130 Hb_004460_020--Hb_000038_150 Hb_004460_020--Hb_001159_210 Hb_008147_030 Hb_008147_030 Hb_004460_020--Hb_008147_030 Hb_001268_230 Hb_001268_230 Hb_004460_020--Hb_001268_230 Hb_066784_020 Hb_066784_020 Hb_067345_050--Hb_066784_020 Hb_001135_270 Hb_001135_270 Hb_067345_050--Hb_001135_270 Hb_003529_210 Hb_003529_210 Hb_067345_050--Hb_003529_210 Hb_081636_010 Hb_081636_010 Hb_067345_050--Hb_081636_010 Hb_005799_030 Hb_005799_030 Hb_067345_050--Hb_005799_030 Hb_067345_050--Hb_182310_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0337666 0 0 0.0155036 0.0631947 0.064142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00795728 0

CAGE analysis