Hb_001159_210

Information

Type -
Description -
Location Contig1159: 186924-188408
Sequence    

Annotation

kegg
ID rcu:RCOM_1681350
description multidrug resistance pump, putative
nr
ID XP_012087075.1
description PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
swissprot
ID Q9SIA5
description MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1
trembl
ID B9RBV0
description MATE efflux family protein OS=Ricinus communis GN=RCOM_1681350 PE=3 SV=1
Gene Ontology
ID GO:0016020
description mate efflux family protein dtx1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001159_210 0.0 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
2 Hb_000038_150 0.1286464922 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
3 Hb_002326_060 0.1516615954 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
4 Hb_134732_010 0.1587498471 - - -
5 Hb_047661_010 0.1670257416 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
6 Hb_004460_020 0.168799716 - - chaperone protein DNAj, putative [Ricinus communis]
7 Hb_003320_030 0.1713944785 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005116_020 0.1781298235 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
9 Hb_001017_100 0.2012522363 - - PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]
10 Hb_000161_100 0.2028783436 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
11 Hb_156144_020 0.2069100434 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
12 Hb_000211_080 0.2093155377 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
13 Hb_001146_070 0.2150935523 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
14 Hb_045502_010 0.2162018727 - - prefoldin subunit 1 [Jatropha curcas]
15 Hb_001135_270 0.2175545748 - - -
16 Hb_000123_390 0.2177409315 - - conserved hypothetical protein [Ricinus communis]
17 Hb_081636_010 0.2187717006 - - -
18 Hb_003529_220 0.2188902713 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
19 Hb_005799_030 0.2192362603 - - PREDICTED: uncharacterized protein LOC103926623 [Pyrus x bretschneideri]
20 Hb_035360_010 0.2193630066 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_001159_210 Hb_001159_210 Hb_000038_150 Hb_000038_150 Hb_001159_210--Hb_000038_150 Hb_002326_060 Hb_002326_060 Hb_001159_210--Hb_002326_060 Hb_134732_010 Hb_134732_010 Hb_001159_210--Hb_134732_010 Hb_047661_010 Hb_047661_010 Hb_001159_210--Hb_047661_010 Hb_004460_020 Hb_004460_020 Hb_001159_210--Hb_004460_020 Hb_003320_030 Hb_003320_030 Hb_001159_210--Hb_003320_030 Hb_045502_010 Hb_045502_010 Hb_000038_150--Hb_045502_010 Hb_000038_150--Hb_134732_010 Hb_035360_010 Hb_035360_010 Hb_000038_150--Hb_035360_010 Hb_000619_070 Hb_000619_070 Hb_000038_150--Hb_000619_070 Hb_000038_150--Hb_004460_020 Hb_002326_060--Hb_134732_010 Hb_000176_060 Hb_000176_060 Hb_002326_060--Hb_000176_060 Hb_000001_160 Hb_000001_160 Hb_002326_060--Hb_000001_160 Hb_001935_190 Hb_001935_190 Hb_002326_060--Hb_001935_190 Hb_002326_060--Hb_000038_150 Hb_005116_020 Hb_005116_020 Hb_134732_010--Hb_005116_020 Hb_134732_010--Hb_003320_030 Hb_156144_020 Hb_156144_020 Hb_134732_010--Hb_156144_020 Hb_000200_060 Hb_000200_060 Hb_134732_010--Hb_000200_060 Hb_005989_010 Hb_005989_010 Hb_047661_010--Hb_005989_010 Hb_009973_020 Hb_009973_020 Hb_047661_010--Hb_009973_020 Hb_023323_010 Hb_023323_010 Hb_047661_010--Hb_023323_010 Hb_047661_010--Hb_004460_020 Hb_002374_560 Hb_002374_560 Hb_047661_010--Hb_002374_560 Hb_001767_020 Hb_001767_020 Hb_004460_020--Hb_001767_020 Hb_004102_130 Hb_004102_130 Hb_004460_020--Hb_004102_130 Hb_008147_030 Hb_008147_030 Hb_004460_020--Hb_008147_030 Hb_001268_230 Hb_001268_230 Hb_004460_020--Hb_001268_230 Hb_002983_100 Hb_002983_100 Hb_003320_030--Hb_002983_100 Hb_001329_260 Hb_001329_260 Hb_003320_030--Hb_001329_260 Hb_003320_030--Hb_005116_020 Hb_003320_030--Hb_000038_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.54799 0.900849 0.338205 0.883763 26.5329 18.9016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01097 0.397675 0.793541 0.396896 0.571729

CAGE analysis