Hb_005989_010

Information

Type -
Description -
Location Contig5989: 16338-18616
Sequence    

Annotation

kegg
ID pda:103696607
description uncharacterized LOC103696607
nr
ID XP_008776509.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID A0A061E3H0
description Uncharacterized protein OS=Theobroma cacao GN=TCM_008289 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005989_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
2 Hb_047661_010 0.148803739 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
3 Hb_023323_010 0.1639159381 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
4 Hb_009973_020 0.1847976387 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
5 Hb_003529_220 0.2280959988 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
6 Hb_001899_010 0.2410916611 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
7 Hb_001159_210 0.2442787192 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
8 Hb_001678_020 0.2473585881 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
9 Hb_183574_010 0.2617166252 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
10 Hb_004460_020 0.2651775366 - - chaperone protein DNAj, putative [Ricinus communis]
11 Hb_003529_210 0.270314042 - - -
12 Hb_002518_300 0.2729188594 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
13 Hb_001226_080 0.277698935 - - heat-shock protein, putative [Ricinus communis]
14 Hb_000384_040 0.2813179543 - - PREDICTED: uncharacterized protein LOC105640093 [Jatropha curcas]
15 Hb_179763_010 0.2833831543 - - -
16 Hb_002374_560 0.2848368388 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like [Populus euphratica]
17 Hb_005799_030 0.285398364 - - PREDICTED: uncharacterized protein LOC103926623 [Pyrus x bretschneideri]
18 Hb_001668_030 0.2858311484 - - conserved hypothetical protein [Ricinus communis]
19 Hb_066784_020 0.2881343238 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001135_270 0.2885565051 - - -

Gene co-expression network

sample Hb_005989_010 Hb_005989_010 Hb_047661_010 Hb_047661_010 Hb_005989_010--Hb_047661_010 Hb_023323_010 Hb_023323_010 Hb_005989_010--Hb_023323_010 Hb_009973_020 Hb_009973_020 Hb_005989_010--Hb_009973_020 Hb_003529_220 Hb_003529_220 Hb_005989_010--Hb_003529_220 Hb_001899_010 Hb_001899_010 Hb_005989_010--Hb_001899_010 Hb_001159_210 Hb_001159_210 Hb_005989_010--Hb_001159_210 Hb_047661_010--Hb_001159_210 Hb_047661_010--Hb_009973_020 Hb_047661_010--Hb_023323_010 Hb_004460_020 Hb_004460_020 Hb_047661_010--Hb_004460_020 Hb_002374_560 Hb_002374_560 Hb_047661_010--Hb_002374_560 Hb_023323_010--Hb_009973_020 Hb_001678_020 Hb_001678_020 Hb_023323_010--Hb_001678_020 Hb_000322_110 Hb_000322_110 Hb_023323_010--Hb_000322_110 Hb_005656_060 Hb_005656_060 Hb_023323_010--Hb_005656_060 Hb_021068_010 Hb_021068_010 Hb_009973_020--Hb_021068_010 Hb_159555_010 Hb_159555_010 Hb_009973_020--Hb_159555_010 Hb_009973_020--Hb_001678_020 Hb_003529_220--Hb_001899_010 Hb_179763_010 Hb_179763_010 Hb_003529_220--Hb_179763_010 Hb_108404_010 Hb_108404_010 Hb_003529_220--Hb_108404_010 Hb_002673_050 Hb_002673_050 Hb_003529_220--Hb_002673_050 Hb_091369_010 Hb_091369_010 Hb_003529_220--Hb_091369_010 Hb_008473_010 Hb_008473_010 Hb_003529_220--Hb_008473_010 Hb_003529_210 Hb_003529_210 Hb_001899_010--Hb_003529_210 Hb_005799_030 Hb_005799_030 Hb_001899_010--Hb_005799_030 Hb_001135_270 Hb_001135_270 Hb_001899_010--Hb_001135_270 Hb_001899_010--Hb_179763_010 Hb_066784_020 Hb_066784_020 Hb_001899_010--Hb_066784_020 Hb_000038_150 Hb_000038_150 Hb_001159_210--Hb_000038_150 Hb_002326_060 Hb_002326_060 Hb_001159_210--Hb_002326_060 Hb_134732_010 Hb_134732_010 Hb_001159_210--Hb_134732_010 Hb_001159_210--Hb_004460_020 Hb_003320_030 Hb_003320_030 Hb_001159_210--Hb_003320_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.18696 0 0.0503491 0.036264 1.82013 1.82164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.145864 0.159271 0.162123

CAGE analysis