Hb_000322_110

Information

Type -
Description -
Location Contig322: 130717-131882
Sequence    

Annotation

kegg
ID vvi:104880629
description EPIDERMAL PATTERNING FACTOR-like protein 5
nr
ID XP_012077531.1
description PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Jatropha curcas]
swissprot
ID C4B8C4
description EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana GN=EPFL3 PE=1 SV=1
trembl
ID A0A0D2UFI4
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G032500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000322_110 0.0 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Jatropha curcas]
2 Hb_000732_270 0.2104486347 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
3 Hb_023323_010 0.2529157099 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
4 Hb_010620_010 0.3075196884 - - hypothetical protein JCGZ_22570 [Jatropha curcas]
5 Hb_178613_010 0.3136600185 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
6 Hb_004480_070 0.3181047069 - - cytochrome P450, putative [Ricinus communis]
7 Hb_137153_010 0.3190419127 - - -
8 Hb_001226_080 0.3209771708 - - heat-shock protein, putative [Ricinus communis]
9 Hb_002986_120 0.3242121914 - - -
10 Hb_001678_020 0.3248113891 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
11 Hb_005656_060 0.3271695493 - - -
12 Hb_136856_010 0.3295466756 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
13 Hb_021068_020 0.3297837093 - - -
14 Hb_009066_010 0.3311456172 - - -
15 Hb_068347_020 0.331654202 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_027394_010 0.331656471 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
17 Hb_089491_010 0.3320846274 - - -
18 Hb_098466_010 0.3322463465 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
19 Hb_009268_110 0.3323128195 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
20 Hb_001524_110 0.3337284411 - - PREDICTED: uncharacterized protein LOC104611877 isoform X2 [Nelumbo nucifera]

Gene co-expression network

sample Hb_000322_110 Hb_000322_110 Hb_000732_270 Hb_000732_270 Hb_000322_110--Hb_000732_270 Hb_023323_010 Hb_023323_010 Hb_000322_110--Hb_023323_010 Hb_010620_010 Hb_010620_010 Hb_000322_110--Hb_010620_010 Hb_178613_010 Hb_178613_010 Hb_000322_110--Hb_178613_010 Hb_004480_070 Hb_004480_070 Hb_000322_110--Hb_004480_070 Hb_137153_010 Hb_137153_010 Hb_000322_110--Hb_137153_010 Hb_111834_010 Hb_111834_010 Hb_000732_270--Hb_111834_010 Hb_000732_270--Hb_023323_010 Hb_001524_110 Hb_001524_110 Hb_000732_270--Hb_001524_110 Hb_152439_010 Hb_152439_010 Hb_000732_270--Hb_152439_010 Hb_000103_360 Hb_000103_360 Hb_000732_270--Hb_000103_360 Hb_005989_010 Hb_005989_010 Hb_023323_010--Hb_005989_010 Hb_009973_020 Hb_009973_020 Hb_023323_010--Hb_009973_020 Hb_047661_010 Hb_047661_010 Hb_023323_010--Hb_047661_010 Hb_001678_020 Hb_001678_020 Hb_023323_010--Hb_001678_020 Hb_005656_060 Hb_005656_060 Hb_023323_010--Hb_005656_060 Hb_010620_010--Hb_001678_020 Hb_000431_020 Hb_000431_020 Hb_010620_010--Hb_000431_020 Hb_001102_260 Hb_001102_260 Hb_010620_010--Hb_001102_260 Hb_000101_160 Hb_000101_160 Hb_010620_010--Hb_000101_160 Hb_008725_150 Hb_008725_150 Hb_010620_010--Hb_008725_150 Hb_006846_090 Hb_006846_090 Hb_010620_010--Hb_006846_090 Hb_002986_120 Hb_002986_120 Hb_178613_010--Hb_002986_120 Hb_061365_010 Hb_061365_010 Hb_178613_010--Hb_061365_010 Hb_002240_100 Hb_002240_100 Hb_178613_010--Hb_002240_100 Hb_137515_010 Hb_137515_010 Hb_178613_010--Hb_137515_010 Hb_001226_080 Hb_001226_080 Hb_178613_010--Hb_001226_080 Hb_003847_010 Hb_003847_010 Hb_178613_010--Hb_003847_010 Hb_001668_030 Hb_001668_030 Hb_004480_070--Hb_001668_030 Hb_001767_020 Hb_001767_020 Hb_004480_070--Hb_001767_020 Hb_000352_130 Hb_000352_130 Hb_004480_070--Hb_000352_130 Hb_000580_060 Hb_000580_060 Hb_004480_070--Hb_000580_060 Hb_000211_080 Hb_000211_080 Hb_004480_070--Hb_000211_080 Hb_001775_040 Hb_001775_040 Hb_004480_070--Hb_001775_040 Hb_098466_010 Hb_098466_010 Hb_137153_010--Hb_098466_010 Hb_172112_010 Hb_172112_010 Hb_137153_010--Hb_172112_010 Hb_041774_010 Hb_041774_010 Hb_137153_010--Hb_041774_010 Hb_128287_010 Hb_128287_010 Hb_137153_010--Hb_128287_010 Hb_108404_010 Hb_108404_010 Hb_137153_010--Hb_108404_010 Hb_000204_180 Hb_000204_180 Hb_137153_010--Hb_000204_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.143917 0 0 0.57641 1.2322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.245576 0.0653404 0

CAGE analysis