Hb_152439_010

Information

Type -
Description -
Location Contig152439: 36054-41925
Sequence    

Annotation

kegg
ID cmo:103496240
description uncharacterized LOC103496240
nr
ID XP_012481130.1
description PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13106: 10990-35223
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152439_010 0.0 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
2 Hb_000364_110 0.1570695767 - - hypothetical protein PRUPE_ppa016620mg [Prunus persica]
3 Hb_003847_010 0.2326072914 - - -
4 Hb_000174_280 0.2425418998 - - -
5 Hb_002240_100 0.2643527583 - - -
6 Hb_001226_080 0.28439722 - - heat-shock protein, putative [Ricinus communis]
7 Hb_001524_100 0.3002406642 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
8 Hb_005803_020 0.3105416937 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
9 Hb_111834_010 0.3203752452 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
10 Hb_030215_010 0.3212538688 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_030736_110 0.3222846153 - - -
12 Hb_000380_200 0.3303832155 - - -
13 Hb_000732_270 0.3387595468 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
14 Hb_001711_070 0.3431000641 - - -
15 Hb_002188_020 0.3448100648 - - unnamed protein product [Vitis vinifera]
16 Hb_012340_040 0.3477194182 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase-like [Populus euphratica]
17 Hb_001221_010 0.349725251 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004829_020 0.3523019132 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_178613_010 0.3594564912 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
20 Hb_062858_010 0.3610113112 - - heat-shock protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_152439_010 Hb_152439_010 Hb_000364_110 Hb_000364_110 Hb_152439_010--Hb_000364_110 Hb_003847_010 Hb_003847_010 Hb_152439_010--Hb_003847_010 Hb_000174_280 Hb_000174_280 Hb_152439_010--Hb_000174_280 Hb_002240_100 Hb_002240_100 Hb_152439_010--Hb_002240_100 Hb_001226_080 Hb_001226_080 Hb_152439_010--Hb_001226_080 Hb_001524_100 Hb_001524_100 Hb_152439_010--Hb_001524_100 Hb_030736_110 Hb_030736_110 Hb_000364_110--Hb_030736_110 Hb_005803_020 Hb_005803_020 Hb_000364_110--Hb_005803_020 Hb_001221_010 Hb_001221_010 Hb_000364_110--Hb_001221_010 Hb_003772_040 Hb_003772_040 Hb_000364_110--Hb_003772_040 Hb_000364_110--Hb_002240_100 Hb_003847_010--Hb_000174_280 Hb_003847_010--Hb_001226_080 Hb_003847_010--Hb_002240_100 Hb_012340_040 Hb_012340_040 Hb_003847_010--Hb_012340_040 Hb_004829_020 Hb_004829_020 Hb_003847_010--Hb_004829_020 Hb_000174_280--Hb_012340_040 Hb_000174_280--Hb_004829_020 Hb_000174_280--Hb_001226_080 Hb_062858_010 Hb_062858_010 Hb_000174_280--Hb_062858_010 Hb_000174_280--Hb_002240_100 Hb_002240_100--Hb_001524_100 Hb_002240_100--Hb_001226_080 Hb_178613_010 Hb_178613_010 Hb_002240_100--Hb_178613_010 Hb_013205_010 Hb_013205_010 Hb_001226_080--Hb_013205_010 Hb_027394_010 Hb_027394_010 Hb_001226_080--Hb_027394_010 Hb_068347_020 Hb_068347_020 Hb_001226_080--Hb_068347_020 Hb_009066_010 Hb_009066_010 Hb_001226_080--Hb_009066_010 Hb_001524_100--Hb_001226_080 Hb_001524_100--Hb_003847_010 Hb_001524_100--Hb_000174_280 Hb_001524_100--Hb_005803_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0200513 0 0.051804 0.094239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0389203 0

CAGE analysis