Hb_003772_040

Information

Type -
Description -
Location Contig3772: 14257-15351
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003772_040 0.0 - - -
2 Hb_030215_010 0.2575139713 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_004445_010 0.2821400752 - - kinase family protein [Populus trichocarpa]
4 Hb_030736_110 0.3096948106 - - -
5 Hb_001031_060 0.3154936062 - - PREDICTED: uncharacterized protein LOC103940329 [Pyrus x bretschneideri]
6 Hb_006634_010 0.3161259845 - - -
7 Hb_000364_110 0.3332808144 - - hypothetical protein PRUPE_ppa016620mg [Prunus persica]
8 Hb_009189_060 0.3477201039 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
9 Hb_008053_020 0.3502879078 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_005803_020 0.3556992348 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
11 Hb_171273_010 0.3573942299 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
12 Hb_000219_070 0.3762029165 - - -
13 Hb_152439_010 0.3852436584 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
14 Hb_001899_010 0.4029237319 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
15 Hb_017387_030 0.4033842942 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
16 Hb_001524_110 0.4061212321 - - PREDICTED: uncharacterized protein LOC104611877 isoform X2 [Nelumbo nucifera]
17 Hb_184746_010 0.4091806898 - - HSP20-like chaperones superfamily protein [Theobroma cacao]
18 Hb_003400_030 0.4145365182 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
19 Hb_000944_010 0.4145366939 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
20 Hb_002400_450 0.4145506464 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]

Gene co-expression network

sample Hb_003772_040 Hb_003772_040 Hb_030215_010 Hb_030215_010 Hb_003772_040--Hb_030215_010 Hb_004445_010 Hb_004445_010 Hb_003772_040--Hb_004445_010 Hb_030736_110 Hb_030736_110 Hb_003772_040--Hb_030736_110 Hb_001031_060 Hb_001031_060 Hb_003772_040--Hb_001031_060 Hb_006634_010 Hb_006634_010 Hb_003772_040--Hb_006634_010 Hb_000364_110 Hb_000364_110 Hb_003772_040--Hb_000364_110 Hb_009066_010 Hb_009066_010 Hb_030215_010--Hb_009066_010 Hb_068347_020 Hb_068347_020 Hb_030215_010--Hb_068347_020 Hb_027394_010 Hb_027394_010 Hb_030215_010--Hb_027394_010 Hb_021068_020 Hb_021068_020 Hb_030215_010--Hb_021068_020 Hb_136856_010 Hb_136856_010 Hb_030215_010--Hb_136856_010 Hb_089491_010 Hb_089491_010 Hb_030215_010--Hb_089491_010 Hb_001138_030 Hb_001138_030 Hb_004445_010--Hb_001138_030 Hb_000260_140 Hb_000260_140 Hb_004445_010--Hb_000260_140 Hb_003494_010 Hb_003494_010 Hb_004445_010--Hb_003494_010 Hb_045481_010 Hb_045481_010 Hb_004445_010--Hb_045481_010 Hb_008053_020 Hb_008053_020 Hb_004445_010--Hb_008053_020 Hb_030736_110--Hb_000364_110 Hb_005803_020 Hb_005803_020 Hb_030736_110--Hb_005803_020 Hb_004800_110 Hb_004800_110 Hb_030736_110--Hb_004800_110 Hb_001825_050 Hb_001825_050 Hb_030736_110--Hb_001825_050 Hb_007694_030 Hb_007694_030 Hb_030736_110--Hb_007694_030 Hb_001501_040 Hb_001501_040 Hb_001031_060--Hb_001501_040 Hb_000510_220 Hb_000510_220 Hb_001031_060--Hb_000510_220 Hb_002426_010 Hb_002426_010 Hb_001031_060--Hb_002426_010 Hb_009189_060 Hb_009189_060 Hb_001031_060--Hb_009189_060 Hb_001031_060--Hb_006634_010 Hb_007879_010 Hb_007879_010 Hb_001031_060--Hb_007879_010 Hb_006634_010--Hb_009189_060 Hb_171273_010 Hb_171273_010 Hb_006634_010--Hb_171273_010 Hb_048207_010 Hb_048207_010 Hb_006634_010--Hb_048207_010 Hb_006634_010--Hb_002426_010 Hb_006634_010--Hb_000510_220 Hb_152439_010 Hb_152439_010 Hb_000364_110--Hb_152439_010 Hb_000364_110--Hb_005803_020 Hb_001221_010 Hb_001221_010 Hb_000364_110--Hb_001221_010 Hb_002240_100 Hb_002240_100 Hb_000364_110--Hb_002240_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0213267 0 0.0251318 0.0236664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis