Hb_005803_020

Information

Type -
Description -
Location Contig5803: 40183-42609
Sequence    

Annotation

kegg
ID rcu:RCOM_1743710
description serine/threonine-protein kinase bri1, putative (EC:1.3.1.74)
nr
ID XP_002518383.1
description serine/threonine-protein kinase bri1, putative [Ricinus communis]
swissprot
ID Q6R2K2
description Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1
trembl
ID B9RXB4
description Serine/threonine-protein kinase bri1, putative OS=Ricinus communis GN=RCOM_1743710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49865: 42550-42656
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005803_020 0.0 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
2 Hb_030736_110 0.1899322208 - - -
3 Hb_000364_110 0.2385202751 - - hypothetical protein PRUPE_ppa016620mg [Prunus persica]
4 Hb_001524_100 0.3002195348 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
5 Hb_002485_020 0.3087574832 - - metal transport family protein [Populus trichocarpa]
6 Hb_152439_010 0.3105416937 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
7 Hb_003811_010 0.3113878575 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
8 Hb_002240_100 0.3316909145 - - -
9 Hb_007101_220 0.348593649 - - Gibberellin-regulated protein 3 precursor, putative [Ricinus communis]
10 Hb_003772_040 0.3556992348 - - -
11 Hb_004800_110 0.3626913989 - - PREDICTED: proline-rich receptor-like protein kinase PERK4 [Jatropha curcas]
12 Hb_006913_090 0.3636794619 - - PREDICTED: uncharacterized protein LOC101215996 [Cucumis sativus]
13 Hb_002710_020 0.3655700694 - - -
14 Hb_004445_010 0.3743144961 - - kinase family protein [Populus trichocarpa]
15 Hb_007694_030 0.3750690673 - - hypothetical protein SORBIDRAFT_04g037485 [Sorghum bicolor]
16 Hb_153558_010 0.3838336781 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
17 Hb_010603_030 0.3865518154 - - -
18 Hb_168893_010 0.386826037 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
19 Hb_046198_020 0.3875990617 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006634_010 0.3881645392 - - -

Gene co-expression network

sample Hb_005803_020 Hb_005803_020 Hb_030736_110 Hb_030736_110 Hb_005803_020--Hb_030736_110 Hb_000364_110 Hb_000364_110 Hb_005803_020--Hb_000364_110 Hb_001524_100 Hb_001524_100 Hb_005803_020--Hb_001524_100 Hb_002485_020 Hb_002485_020 Hb_005803_020--Hb_002485_020 Hb_152439_010 Hb_152439_010 Hb_005803_020--Hb_152439_010 Hb_003811_010 Hb_003811_010 Hb_005803_020--Hb_003811_010 Hb_030736_110--Hb_000364_110 Hb_003772_040 Hb_003772_040 Hb_030736_110--Hb_003772_040 Hb_004800_110 Hb_004800_110 Hb_030736_110--Hb_004800_110 Hb_001825_050 Hb_001825_050 Hb_030736_110--Hb_001825_050 Hb_007694_030 Hb_007694_030 Hb_030736_110--Hb_007694_030 Hb_000364_110--Hb_152439_010 Hb_001221_010 Hb_001221_010 Hb_000364_110--Hb_001221_010 Hb_000364_110--Hb_003772_040 Hb_002240_100 Hb_002240_100 Hb_000364_110--Hb_002240_100 Hb_001524_100--Hb_002240_100 Hb_001226_080 Hb_001226_080 Hb_001524_100--Hb_001226_080 Hb_003847_010 Hb_003847_010 Hb_001524_100--Hb_003847_010 Hb_000174_280 Hb_000174_280 Hb_001524_100--Hb_000174_280 Hb_001524_100--Hb_152439_010 Hb_002485_020--Hb_003811_010 Hb_002485_020--Hb_004800_110 Hb_002710_020 Hb_002710_020 Hb_002485_020--Hb_002710_020 Hb_002485_020--Hb_007694_030 Hb_000069_080 Hb_000069_080 Hb_002485_020--Hb_000069_080 Hb_002485_020--Hb_001825_050 Hb_152439_010--Hb_003847_010 Hb_152439_010--Hb_000174_280 Hb_152439_010--Hb_002240_100 Hb_152439_010--Hb_001226_080 Hb_003811_010--Hb_004800_110 Hb_003811_010--Hb_002710_020 Hb_003811_010--Hb_007694_030 Hb_003811_010--Hb_000069_080 Hb_003811_010--Hb_001825_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0280667 0 0.106815 0.0329006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0274528 0

CAGE analysis