Hb_000174_280

Information

Type -
Description -
Location Contig174: 317839-318126
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16584: 306007-317908
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_280 0.0 - - -
2 Hb_003847_010 0.0405137525 - - -
3 Hb_012340_040 0.1865050177 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase-like [Populus euphratica]
4 Hb_004829_020 0.1920663135 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_001226_080 0.2019914365 - - heat-shock protein, putative [Ricinus communis]
6 Hb_062858_010 0.2200098721 - - heat-shock protein, putative [Ricinus communis]
7 Hb_002240_100 0.2243935723 - - -
8 Hb_152439_010 0.2425418998 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
9 Hb_004282_030 0.2852376927 - - hypothetical protein EUGRSUZ_B01857 [Eucalyptus grandis]
10 Hb_001524_100 0.2908050989 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
11 Hb_000795_010 0.2927877986 - - -
12 Hb_002188_020 0.300502506 - - unnamed protein product [Vitis vinifera]
13 Hb_111834_010 0.3116100026 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
14 Hb_009268_110 0.3154735269 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
15 Hb_089491_010 0.3155912534 - - -
16 Hb_178613_010 0.3159390929 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
17 Hb_013727_010 0.3159761018 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
18 Hb_136856_010 0.3203097116 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
19 Hb_005542_020 0.3224859147 - - lupus la ribonucleoprotein, putative [Ricinus communis]
20 Hb_021068_020 0.3238560793 - - -

Gene co-expression network

sample Hb_000174_280 Hb_000174_280 Hb_003847_010 Hb_003847_010 Hb_000174_280--Hb_003847_010 Hb_012340_040 Hb_012340_040 Hb_000174_280--Hb_012340_040 Hb_004829_020 Hb_004829_020 Hb_000174_280--Hb_004829_020 Hb_001226_080 Hb_001226_080 Hb_000174_280--Hb_001226_080 Hb_062858_010 Hb_062858_010 Hb_000174_280--Hb_062858_010 Hb_002240_100 Hb_002240_100 Hb_000174_280--Hb_002240_100 Hb_003847_010--Hb_001226_080 Hb_003847_010--Hb_002240_100 Hb_003847_010--Hb_012340_040 Hb_003847_010--Hb_004829_020 Hb_152439_010 Hb_152439_010 Hb_003847_010--Hb_152439_010 Hb_012340_040--Hb_004829_020 Hb_000795_010 Hb_000795_010 Hb_012340_040--Hb_000795_010 Hb_004282_030 Hb_004282_030 Hb_012340_040--Hb_004282_030 Hb_007761_010 Hb_007761_010 Hb_012340_040--Hb_007761_010 Hb_128173_010 Hb_128173_010 Hb_012340_040--Hb_128173_010 Hb_004829_020--Hb_000795_010 Hb_004829_020--Hb_004282_030 Hb_004829_020--Hb_007761_010 Hb_004829_020--Hb_128173_010 Hb_001226_080--Hb_002240_100 Hb_013205_010 Hb_013205_010 Hb_001226_080--Hb_013205_010 Hb_027394_010 Hb_027394_010 Hb_001226_080--Hb_027394_010 Hb_068347_020 Hb_068347_020 Hb_001226_080--Hb_068347_020 Hb_009066_010 Hb_009066_010 Hb_001226_080--Hb_009066_010 Hb_073171_060 Hb_073171_060 Hb_062858_010--Hb_073171_060 Hb_000055_100 Hb_000055_100 Hb_062858_010--Hb_000055_100 Hb_000368_130 Hb_000368_130 Hb_062858_010--Hb_000368_130 Hb_088224_010 Hb_088224_010 Hb_062858_010--Hb_088224_010 Hb_000245_240 Hb_000245_240 Hb_062858_010--Hb_000245_240 Hb_000085_110 Hb_000085_110 Hb_062858_010--Hb_000085_110 Hb_001524_100 Hb_001524_100 Hb_002240_100--Hb_001524_100 Hb_002240_100--Hb_152439_010 Hb_178613_010 Hb_178613_010 Hb_002240_100--Hb_178613_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.167524 0.506703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.152738 0

CAGE analysis