Hb_001226_080

Information

Type -
Description -
Location Contig1226: 110532-113656
Sequence    

Annotation

kegg
ID rcu:RCOM_0706500
description heat-shock protein, putative
nr
ID XP_002516107.1
description heat-shock protein, putative [Ricinus communis]
swissprot
ID Q01545
description 18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1
trembl
ID B9RQT8
description Heat-shock protein, putative OS=Ricinus communis GN=RCOM_0706500 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06857: 113132-113607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001226_080 0.0 - - heat-shock protein, putative [Ricinus communis]
2 Hb_002240_100 0.1534093966 - - -
3 Hb_003847_010 0.1704449019 - - -
4 Hb_013205_010 0.19582995 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
5 Hb_027394_010 0.1989646344 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
6 Hb_068347_020 0.1989694669 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_009066_010 0.2001851135 - - -
8 Hb_000174_280 0.2019914365 - - -
9 Hb_010399_020 0.203078933 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
10 Hb_008151_030 0.2042678904 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_021068_020 0.2063469262 - - -
12 Hb_034667_010 0.2063895393 - - -
13 Hb_000260_190 0.2078373903 - - -
14 Hb_002400_450 0.2087197136 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
15 Hb_003400_030 0.2104936491 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
16 Hb_000944_010 0.210531447 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
17 Hb_136856_010 0.2130899275 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
18 Hb_008473_010 0.2148539804 - - PREDICTED: laccase-14-like [Jatropha curcas]
19 Hb_091369_010 0.2152729292 - - -
20 Hb_002673_050 0.2161491009 - - -

Gene co-expression network

sample Hb_001226_080 Hb_001226_080 Hb_002240_100 Hb_002240_100 Hb_001226_080--Hb_002240_100 Hb_003847_010 Hb_003847_010 Hb_001226_080--Hb_003847_010 Hb_013205_010 Hb_013205_010 Hb_001226_080--Hb_013205_010 Hb_027394_010 Hb_027394_010 Hb_001226_080--Hb_027394_010 Hb_068347_020 Hb_068347_020 Hb_001226_080--Hb_068347_020 Hb_009066_010 Hb_009066_010 Hb_001226_080--Hb_009066_010 Hb_001524_100 Hb_001524_100 Hb_002240_100--Hb_001524_100 Hb_002240_100--Hb_003847_010 Hb_000174_280 Hb_000174_280 Hb_002240_100--Hb_000174_280 Hb_152439_010 Hb_152439_010 Hb_002240_100--Hb_152439_010 Hb_178613_010 Hb_178613_010 Hb_002240_100--Hb_178613_010 Hb_003847_010--Hb_000174_280 Hb_012340_040 Hb_012340_040 Hb_003847_010--Hb_012340_040 Hb_004829_020 Hb_004829_020 Hb_003847_010--Hb_004829_020 Hb_003847_010--Hb_152439_010 Hb_010399_020 Hb_010399_020 Hb_013205_010--Hb_010399_020 Hb_008151_030 Hb_008151_030 Hb_013205_010--Hb_008151_030 Hb_034667_010 Hb_034667_010 Hb_013205_010--Hb_034667_010 Hb_000260_190 Hb_000260_190 Hb_013205_010--Hb_000260_190 Hb_002400_450 Hb_002400_450 Hb_013205_010--Hb_002400_450 Hb_003400_030 Hb_003400_030 Hb_013205_010--Hb_003400_030 Hb_027394_010--Hb_068347_020 Hb_027394_010--Hb_009066_010 Hb_021068_020 Hb_021068_020 Hb_027394_010--Hb_021068_020 Hb_136856_010 Hb_136856_010 Hb_027394_010--Hb_136856_010 Hb_027394_010--Hb_013205_010 Hb_089491_010 Hb_089491_010 Hb_027394_010--Hb_089491_010 Hb_068347_020--Hb_009066_010 Hb_068347_020--Hb_021068_020 Hb_068347_020--Hb_136856_010 Hb_068347_020--Hb_013205_010 Hb_068347_020--Hb_089491_010 Hb_009066_010--Hb_021068_020 Hb_009066_010--Hb_136856_010 Hb_009066_010--Hb_089491_010 Hb_009268_110 Hb_009268_110 Hb_009066_010--Hb_009268_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.767021 1.07212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.144714 0

CAGE analysis