Hb_178613_010

Information

Type -
Description -
Location Contig178613: 31-922
Sequence    

Annotation

kegg
ID tcc:TCM_028587
description Gag protease polyprotein
nr
ID XP_012481130.1
description PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178613_010 0.0 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
2 Hb_002986_120 0.0376512707 - - -
3 Hb_061365_010 0.2812606872 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
4 Hb_002240_100 0.2842644559 - - -
5 Hb_137515_010 0.2854993238 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Populus euphratica]
6 Hb_001226_080 0.2918238813 - - heat-shock protein, putative [Ricinus communis]
7 Hb_003847_010 0.2988282981 - - -
8 Hb_001524_100 0.3103924206 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
9 Hb_000322_110 0.3136600185 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Jatropha curcas]
10 Hb_000174_280 0.3159390929 - - -
11 Hb_053643_010 0.3196476278 - - Zinc finger protein GIS2 [Medicago truncatula]
12 Hb_000380_200 0.3214759072 - - -
13 Hb_009686_010 0.3296112151 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
14 Hb_003238_030 0.3358712032 - - hypothetical protein EUGRSUZ_I00356 [Eucalyptus grandis]
15 Hb_003647_120 0.3424995796 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]
16 Hb_009922_010 0.3434936382 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
17 Hb_002003_110 0.3437159812 - - PREDICTED: uncharacterized protein LOC105634406 [Jatropha curcas]
18 Hb_063716_070 0.3505174532 - - hypothetical protein PRUPE_ppa020565mg [Prunus persica]
19 Hb_003656_120 0.3510568808 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
20 Hb_000732_270 0.352816679 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]

Gene co-expression network

sample Hb_178613_010 Hb_178613_010 Hb_002986_120 Hb_002986_120 Hb_178613_010--Hb_002986_120 Hb_061365_010 Hb_061365_010 Hb_178613_010--Hb_061365_010 Hb_002240_100 Hb_002240_100 Hb_178613_010--Hb_002240_100 Hb_137515_010 Hb_137515_010 Hb_178613_010--Hb_137515_010 Hb_001226_080 Hb_001226_080 Hb_178613_010--Hb_001226_080 Hb_003847_010 Hb_003847_010 Hb_178613_010--Hb_003847_010 Hb_002986_120--Hb_061365_010 Hb_002986_120--Hb_137515_010 Hb_053643_010 Hb_053643_010 Hb_002986_120--Hb_053643_010 Hb_002986_120--Hb_002240_100 Hb_002986_120--Hb_003847_010 Hb_061365_010--Hb_137515_010 Hb_061365_010--Hb_053643_010 Hb_009922_010 Hb_009922_010 Hb_061365_010--Hb_009922_010 Hb_093432_020 Hb_093432_020 Hb_061365_010--Hb_093432_020 Hb_002928_070 Hb_002928_070 Hb_061365_010--Hb_002928_070 Hb_005203_050 Hb_005203_050 Hb_061365_010--Hb_005203_050 Hb_001524_100 Hb_001524_100 Hb_002240_100--Hb_001524_100 Hb_002240_100--Hb_001226_080 Hb_002240_100--Hb_003847_010 Hb_000174_280 Hb_000174_280 Hb_002240_100--Hb_000174_280 Hb_152439_010 Hb_152439_010 Hb_002240_100--Hb_152439_010 Hb_137515_010--Hb_053643_010 Hb_137515_010--Hb_009922_010 Hb_137515_010--Hb_093432_020 Hb_137515_010--Hb_005203_050 Hb_137515_010--Hb_002928_070 Hb_001226_080--Hb_003847_010 Hb_013205_010 Hb_013205_010 Hb_001226_080--Hb_013205_010 Hb_027394_010 Hb_027394_010 Hb_001226_080--Hb_027394_010 Hb_068347_020 Hb_068347_020 Hb_001226_080--Hb_068347_020 Hb_009066_010 Hb_009066_010 Hb_001226_080--Hb_009066_010 Hb_003847_010--Hb_000174_280 Hb_012340_040 Hb_012340_040 Hb_003847_010--Hb_012340_040 Hb_004829_020 Hb_004829_020 Hb_003847_010--Hb_004829_020 Hb_003847_010--Hb_152439_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0241863 0 0 0.0541398 0.069478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0211193 0

CAGE analysis