Hb_002986_120

Information

Type -
Description -
Location Contig2986: 102067-105966
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002986_120 0.0 - - -
2 Hb_178613_010 0.0376512707 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
3 Hb_061365_010 0.2732976579 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
4 Hb_137515_010 0.2766799737 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Populus euphratica]
5 Hb_053643_010 0.3109826428 - - Zinc finger protein GIS2 [Medicago truncatula]
6 Hb_002240_100 0.3128882302 - - -
7 Hb_003847_010 0.3152306409 - - -
8 Hb_002003_110 0.3175830563 - - PREDICTED: uncharacterized protein LOC105634406 [Jatropha curcas]
9 Hb_001226_080 0.3196316015 - - heat-shock protein, putative [Ricinus communis]
10 Hb_000322_110 0.3242121914 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Jatropha curcas]
11 Hb_000174_280 0.3288380939 - - -
12 Hb_009922_010 0.3310133344 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
13 Hb_000380_200 0.3323839 - - -
14 Hb_003238_030 0.3364268008 - - hypothetical protein EUGRSUZ_I00356 [Eucalyptus grandis]
15 Hb_001524_100 0.3389961605 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
16 Hb_003656_120 0.3440488594 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
17 Hb_009686_010 0.3499322456 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
18 Hb_021583_010 0.35202103 - - -
19 Hb_003647_120 0.3522655671 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]
20 Hb_000732_270 0.3556615753 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]

Gene co-expression network

sample Hb_002986_120 Hb_002986_120 Hb_178613_010 Hb_178613_010 Hb_002986_120--Hb_178613_010 Hb_061365_010 Hb_061365_010 Hb_002986_120--Hb_061365_010 Hb_137515_010 Hb_137515_010 Hb_002986_120--Hb_137515_010 Hb_053643_010 Hb_053643_010 Hb_002986_120--Hb_053643_010 Hb_002240_100 Hb_002240_100 Hb_002986_120--Hb_002240_100 Hb_003847_010 Hb_003847_010 Hb_002986_120--Hb_003847_010 Hb_178613_010--Hb_061365_010 Hb_178613_010--Hb_002240_100 Hb_178613_010--Hb_137515_010 Hb_001226_080 Hb_001226_080 Hb_178613_010--Hb_001226_080 Hb_178613_010--Hb_003847_010 Hb_061365_010--Hb_137515_010 Hb_061365_010--Hb_053643_010 Hb_009922_010 Hb_009922_010 Hb_061365_010--Hb_009922_010 Hb_093432_020 Hb_093432_020 Hb_061365_010--Hb_093432_020 Hb_002928_070 Hb_002928_070 Hb_061365_010--Hb_002928_070 Hb_005203_050 Hb_005203_050 Hb_061365_010--Hb_005203_050 Hb_137515_010--Hb_053643_010 Hb_137515_010--Hb_009922_010 Hb_137515_010--Hb_093432_020 Hb_137515_010--Hb_005203_050 Hb_137515_010--Hb_002928_070 Hb_053643_010--Hb_009922_010 Hb_053643_010--Hb_093432_020 Hb_053643_010--Hb_002928_070 Hb_001279_230 Hb_001279_230 Hb_053643_010--Hb_001279_230 Hb_001524_100 Hb_001524_100 Hb_002240_100--Hb_001524_100 Hb_002240_100--Hb_001226_080 Hb_002240_100--Hb_003847_010 Hb_000174_280 Hb_000174_280 Hb_002240_100--Hb_000174_280 Hb_152439_010 Hb_152439_010 Hb_002240_100--Hb_152439_010 Hb_003847_010--Hb_000174_280 Hb_003847_010--Hb_001226_080 Hb_012340_040 Hb_012340_040 Hb_003847_010--Hb_012340_040 Hb_004829_020 Hb_004829_020 Hb_003847_010--Hb_004829_020 Hb_003847_010--Hb_152439_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0919702 0 0 0.156988 0.222888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0708166 0

CAGE analysis