Hb_009922_010

Information

Type -
Description -
Location Contig9922: 6315-8907
Sequence    

Annotation

kegg
ID pda:103715912
description uncharacterized LOC103715912
nr
ID XP_009599307.1
description PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID M5WQG1
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023432mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009922_010 0.0 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
2 Hb_053643_010 0.044566849 - - Zinc finger protein GIS2 [Medicago truncatula]
3 Hb_093432_020 0.0541265572 - - PREDICTED: QWRF motif-containing protein 3 [Jatropha curcas]
4 Hb_002928_070 0.0623760303 - - -
5 Hb_061365_010 0.1654909138 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
6 Hb_137515_010 0.191792492 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Populus euphratica]
7 Hb_005203_050 0.2373695188 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
8 Hb_001279_230 0.237596331 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
9 Hb_004108_010 0.2504968911 - - -
10 Hb_003647_120 0.2843898195 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]
11 Hb_000684_340 0.2856528629 - - PREDICTED: L-ascorbate peroxidase 2, cytosolic [Pyrus x bretschneideri]
12 Hb_144951_010 0.2864264975 - - putative reverse transcriptase [Oryza sativa Japonica Group]
13 Hb_003337_070 0.2971572732 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
14 Hb_089341_010 0.2993856398 - - Uncharacterized protein TCM_018339 [Theobroma cacao]
15 Hb_033623_010 0.309244008 - - -
16 Hb_001723_110 0.3163202146 - - PREDICTED: solute carrier family 25 member 44-like isoform X2 [Malus domestica]
17 Hb_004483_020 0.3209529822 - - -
18 Hb_004939_020 0.3213471694 - - gag/pol protein [Bryonia dioica]
19 Hb_189237_010 0.323466405 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_050495_010 0.3244975845 - - heat-shock protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_009922_010 Hb_009922_010 Hb_053643_010 Hb_053643_010 Hb_009922_010--Hb_053643_010 Hb_093432_020 Hb_093432_020 Hb_009922_010--Hb_093432_020 Hb_002928_070 Hb_002928_070 Hb_009922_010--Hb_002928_070 Hb_061365_010 Hb_061365_010 Hb_009922_010--Hb_061365_010 Hb_137515_010 Hb_137515_010 Hb_009922_010--Hb_137515_010 Hb_005203_050 Hb_005203_050 Hb_009922_010--Hb_005203_050 Hb_053643_010--Hb_093432_020 Hb_053643_010--Hb_002928_070 Hb_053643_010--Hb_061365_010 Hb_053643_010--Hb_137515_010 Hb_001279_230 Hb_001279_230 Hb_053643_010--Hb_001279_230 Hb_093432_020--Hb_002928_070 Hb_004108_010 Hb_004108_010 Hb_093432_020--Hb_004108_010 Hb_093432_020--Hb_061365_010 Hb_093432_020--Hb_137515_010 Hb_002928_070--Hb_004108_010 Hb_002928_070--Hb_061365_010 Hb_002928_070--Hb_001279_230 Hb_061365_010--Hb_137515_010 Hb_061365_010--Hb_005203_050 Hb_137515_010--Hb_005203_050 Hb_137515_010--Hb_002928_070 Hb_000062_500 Hb_000062_500 Hb_005203_050--Hb_000062_500 Hb_032018_010 Hb_032018_010 Hb_005203_050--Hb_032018_010 Hb_033926_010 Hb_033926_010 Hb_005203_050--Hb_033926_010 Hb_009189_030 Hb_009189_030 Hb_005203_050--Hb_009189_030 Hb_005203_050--Hb_053643_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0294673 0 0 0.0222512 0.0208183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis