Hb_033926_010

Information

Type -
Description -
Location Contig33926: 8356-8834
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35438: 8230-9479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033926_010 0.0 - - -
2 Hb_000181_440 0.208946704 - - -
3 Hb_005203_050 0.2122143218 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
4 Hb_007223_010 0.2187771178 - - conserved hypothetical protein [Ricinus communis]
5 Hb_009189_030 0.2207447185 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
6 Hb_009372_010 0.2255484678 - - -
7 Hb_082945_020 0.2302734878 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
8 Hb_003222_010 0.2374498639 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_010447_020 0.2375904011 - - PREDICTED: uncharacterized protein LOC105797464 [Gossypium raimondii]
10 Hb_004631_160 0.2424309408 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
11 Hb_012395_080 0.2469063929 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
12 Hb_006269_040 0.2485374848 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
13 Hb_028795_010 0.2489970116 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
14 Hb_181975_010 0.2513264799 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
15 Hb_003816_020 0.2513575742 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]
16 Hb_005517_010 0.2514366094 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
17 Hb_041237_010 0.2528234151 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003772_020 0.2604554965 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
19 Hb_001916_060 0.2613331417 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
20 Hb_049958_010 0.2620592542 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]

Gene co-expression network

sample Hb_033926_010 Hb_033926_010 Hb_000181_440 Hb_000181_440 Hb_033926_010--Hb_000181_440 Hb_005203_050 Hb_005203_050 Hb_033926_010--Hb_005203_050 Hb_007223_010 Hb_007223_010 Hb_033926_010--Hb_007223_010 Hb_009189_030 Hb_009189_030 Hb_033926_010--Hb_009189_030 Hb_009372_010 Hb_009372_010 Hb_033926_010--Hb_009372_010 Hb_082945_020 Hb_082945_020 Hb_033926_010--Hb_082945_020 Hb_028795_010 Hb_028795_010 Hb_000181_440--Hb_028795_010 Hb_003096_040 Hb_003096_040 Hb_000181_440--Hb_003096_040 Hb_179679_010 Hb_179679_010 Hb_000181_440--Hb_179679_010 Hb_010261_010 Hb_010261_010 Hb_000181_440--Hb_010261_010 Hb_003633_140 Hb_003633_140 Hb_000181_440--Hb_003633_140 Hb_000062_500 Hb_000062_500 Hb_005203_050--Hb_000062_500 Hb_032018_010 Hb_032018_010 Hb_005203_050--Hb_032018_010 Hb_005203_050--Hb_009189_030 Hb_009922_010 Hb_009922_010 Hb_005203_050--Hb_009922_010 Hb_053643_010 Hb_053643_010 Hb_005203_050--Hb_053643_010 Hb_007481_030 Hb_007481_030 Hb_007223_010--Hb_007481_030 Hb_002370_040 Hb_002370_040 Hb_007223_010--Hb_002370_040 Hb_000201_040 Hb_000201_040 Hb_007223_010--Hb_000201_040 Hb_000181_360 Hb_000181_360 Hb_007223_010--Hb_000181_360 Hb_002805_170 Hb_002805_170 Hb_007223_010--Hb_002805_170 Hb_000265_250 Hb_000265_250 Hb_007223_010--Hb_000265_250 Hb_003222_010 Hb_003222_010 Hb_009189_030--Hb_003222_010 Hb_027255_010 Hb_027255_010 Hb_009189_030--Hb_027255_010 Hb_000205_070 Hb_000205_070 Hb_009189_030--Hb_000205_070 Hb_000853_290 Hb_000853_290 Hb_009189_030--Hb_000853_290 Hb_004631_160 Hb_004631_160 Hb_009189_030--Hb_004631_160 Hb_003337_070 Hb_003337_070 Hb_009189_030--Hb_003337_070 Hb_009372_010--Hb_028795_010 Hb_001114_230 Hb_001114_230 Hb_009372_010--Hb_001114_230 Hb_021576_140 Hb_021576_140 Hb_009372_010--Hb_021576_140 Hb_009372_010--Hb_007481_030 Hb_153161_010 Hb_153161_010 Hb_009372_010--Hb_153161_010 Hb_009372_010--Hb_003633_140 Hb_000834_240 Hb_000834_240 Hb_082945_020--Hb_000834_240 Hb_082945_020--Hb_005203_050 Hb_080147_080 Hb_080147_080 Hb_082945_020--Hb_080147_080 Hb_000571_150 Hb_000571_150 Hb_082945_020--Hb_000571_150 Hb_001059_080 Hb_001059_080 Hb_082945_020--Hb_001059_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.334528 0.998577 0.218554 0.0851494 0.648252 0.689831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0519351 0

CAGE analysis