Hb_003222_010

Information

Type -
Description -
Location Contig3222: 14605-15300
Sequence    

Annotation

kegg
ID cmo:103496653
description uncharacterized LOC103496653
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID C7J7N6
description Os10g0357350 protein OS=Oryza sativa subsp. japonica GN=Os10g0357350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003222_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_009189_030 0.1427549299 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
3 Hb_001276_010 0.1833260289 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
4 Hb_001935_190 0.1986481449 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
5 Hb_004631_160 0.2084028821 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
6 Hb_120662_010 0.221900403 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
7 Hb_001916_060 0.2276543382 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
8 Hb_144550_020 0.236331638 - - -
9 Hb_000176_060 0.236515635 - - unnamed protein product [Vitis vinifera]
10 Hb_033926_010 0.2374498639 - - -
11 Hb_022452_010 0.2384899544 - - -
12 Hb_007926_010 0.2436470829 - - PREDICTED: UPF0554 protein C2orf43 homolog isoform X4 [Citrus sinensis]
13 Hb_008616_030 0.2465608744 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
14 Hb_003816_020 0.2495368578 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]
15 Hb_003398_010 0.2531242195 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
16 Hb_000617_040 0.2542784723 - - PREDICTED: uncharacterized protein LOC105647487 isoform X2 [Jatropha curcas]
17 Hb_027255_010 0.2548646578 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
18 Hb_000853_290 0.2556329471 - - PREDICTED: uncharacterized protein LOC105642585 [Jatropha curcas]
19 Hb_082945_020 0.2559038519 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
20 Hb_000205_070 0.2560594241 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003222_010 Hb_003222_010 Hb_009189_030 Hb_009189_030 Hb_003222_010--Hb_009189_030 Hb_001276_010 Hb_001276_010 Hb_003222_010--Hb_001276_010 Hb_001935_190 Hb_001935_190 Hb_003222_010--Hb_001935_190 Hb_004631_160 Hb_004631_160 Hb_003222_010--Hb_004631_160 Hb_120662_010 Hb_120662_010 Hb_003222_010--Hb_120662_010 Hb_001916_060 Hb_001916_060 Hb_003222_010--Hb_001916_060 Hb_027255_010 Hb_027255_010 Hb_009189_030--Hb_027255_010 Hb_000205_070 Hb_000205_070 Hb_009189_030--Hb_000205_070 Hb_000853_290 Hb_000853_290 Hb_009189_030--Hb_000853_290 Hb_009189_030--Hb_004631_160 Hb_003337_070 Hb_003337_070 Hb_009189_030--Hb_003337_070 Hb_022452_010 Hb_022452_010 Hb_001276_010--Hb_022452_010 Hb_000317_090 Hb_000317_090 Hb_001276_010--Hb_000317_090 Hb_000176_060 Hb_000176_060 Hb_001276_010--Hb_000176_060 Hb_171659_010 Hb_171659_010 Hb_001276_010--Hb_171659_010 Hb_003772_080 Hb_003772_080 Hb_001276_010--Hb_003772_080 Hb_001935_190--Hb_120662_010 Hb_001916_120 Hb_001916_120 Hb_001935_190--Hb_001916_120 Hb_001935_190--Hb_001916_060 Hb_000329_420 Hb_000329_420 Hb_001935_190--Hb_000329_420 Hb_000792_110 Hb_000792_110 Hb_001935_190--Hb_000792_110 Hb_000252_090 Hb_000252_090 Hb_001935_190--Hb_000252_090 Hb_008616_030 Hb_008616_030 Hb_004631_160--Hb_008616_030 Hb_003398_010 Hb_003398_010 Hb_004631_160--Hb_003398_010 Hb_000617_040 Hb_000617_040 Hb_004631_160--Hb_000617_040 Hb_007044_010 Hb_007044_010 Hb_004631_160--Hb_007044_010 Hb_011639_010 Hb_011639_010 Hb_004631_160--Hb_011639_010 Hb_004631_160--Hb_000205_070 Hb_003043_060 Hb_003043_060 Hb_120662_010--Hb_003043_060 Hb_030627_040 Hb_030627_040 Hb_120662_010--Hb_030627_040 Hb_050686_010 Hb_050686_010 Hb_120662_010--Hb_050686_010 Hb_120662_010--Hb_000329_420 Hb_001901_080 Hb_001901_080 Hb_120662_010--Hb_001901_080 Hb_101020_010 Hb_101020_010 Hb_001916_060--Hb_101020_010 Hb_114984_010 Hb_114984_010 Hb_001916_060--Hb_114984_010 Hb_001195_150 Hb_001195_150 Hb_001916_060--Hb_001195_150 Hb_128376_010 Hb_128376_010 Hb_001916_060--Hb_128376_010 Hb_005517_010 Hb_005517_010 Hb_001916_060--Hb_005517_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.239571 0.226546 0.0283484 0.0981125 0.376291 0.281914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis