Hb_028795_010

Information

Type -
Description -
Location Contig28795: 1-1315
Sequence    

Annotation

kegg
ID ath:AT5G41740
description TIR-NBS-LRR class disease resistance protein
nr
ID XP_012071293.1
description PREDICTED: TMV resistance protein N-like [Jatropha curcas]
swissprot
ID Q9SZ67
description Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1
trembl
ID A0A067KRS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04974 PE=4 SV=1
Gene Ontology
ID GO:0000166
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028795_010 0.0 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
2 Hb_003633_140 0.1204444224 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
3 Hb_009372_010 0.1308656023 - - -
4 Hb_002316_050 0.1601179043 - - conserved hypothetical protein [Ricinus communis]
5 Hb_018133_030 0.1758523173 - - Heme-binding protein, putative [Ricinus communis]
6 Hb_000808_070 0.1864935464 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
7 Hb_004449_050 0.1869009379 - - PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Jatropha curcas]
8 Hb_000181_440 0.1871493789 - - -
9 Hb_021576_140 0.1871530958 - - PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like [Jatropha curcas]
10 Hb_002609_090 0.1908473044 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_003096_040 0.1925483927 transcription factor TF Family: HB hypothetical protein POPTR_0005s07290g [Populus trichocarpa]
12 Hb_001999_250 0.1958655012 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
13 Hb_001584_220 0.198080794 - - galactinol synthase [Manihot esculenta]
14 Hb_000265_250 0.2002144844 - - auxilin, putative [Ricinus communis]
15 Hb_012226_010 0.2006582821 - - PREDICTED: protein DGCR14 [Jatropha curcas]
16 Hb_001999_280 0.2018192214 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_007257_050 0.2032180757 - - protein with unknown function [Ricinus communis]
18 Hb_010261_010 0.2047821202 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
19 Hb_007223_010 0.2052534148 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003849_260 0.2058595588 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]

Gene co-expression network

sample Hb_028795_010 Hb_028795_010 Hb_003633_140 Hb_003633_140 Hb_028795_010--Hb_003633_140 Hb_009372_010 Hb_009372_010 Hb_028795_010--Hb_009372_010 Hb_002316_050 Hb_002316_050 Hb_028795_010--Hb_002316_050 Hb_018133_030 Hb_018133_030 Hb_028795_010--Hb_018133_030 Hb_000808_070 Hb_000808_070 Hb_028795_010--Hb_000808_070 Hb_004449_050 Hb_004449_050 Hb_028795_010--Hb_004449_050 Hb_002609_090 Hb_002609_090 Hb_003633_140--Hb_002609_090 Hb_003633_140--Hb_002316_050 Hb_001999_250 Hb_001999_250 Hb_003633_140--Hb_001999_250 Hb_007257_050 Hb_007257_050 Hb_003633_140--Hb_007257_050 Hb_031089_030 Hb_031089_030 Hb_003633_140--Hb_031089_030 Hb_001114_230 Hb_001114_230 Hb_009372_010--Hb_001114_230 Hb_021576_140 Hb_021576_140 Hb_009372_010--Hb_021576_140 Hb_007481_030 Hb_007481_030 Hb_009372_010--Hb_007481_030 Hb_153161_010 Hb_153161_010 Hb_009372_010--Hb_153161_010 Hb_009372_010--Hb_003633_140 Hb_001638_040 Hb_001638_040 Hb_002316_050--Hb_001638_040 Hb_000265_250 Hb_000265_250 Hb_002316_050--Hb_000265_250 Hb_002316_050--Hb_000808_070 Hb_002316_050--Hb_018133_030 Hb_000540_120 Hb_000540_120 Hb_002316_050--Hb_000540_120 Hb_009028_030 Hb_009028_030 Hb_018133_030--Hb_009028_030 Hb_057451_010 Hb_057451_010 Hb_018133_030--Hb_057451_010 Hb_018133_030--Hb_000808_070 Hb_018133_030--Hb_004449_050 Hb_030827_060 Hb_030827_060 Hb_018133_030--Hb_030827_060 Hb_164010_070 Hb_164010_070 Hb_018133_030--Hb_164010_070 Hb_001301_230 Hb_001301_230 Hb_000808_070--Hb_001301_230 Hb_003157_010 Hb_003157_010 Hb_000808_070--Hb_003157_010 Hb_006501_020 Hb_006501_020 Hb_000808_070--Hb_006501_020 Hb_000808_070--Hb_007257_050 Hb_000932_070 Hb_000932_070 Hb_000808_070--Hb_000932_070 Hb_003517_060 Hb_003517_060 Hb_004449_050--Hb_003517_060 Hb_004449_050--Hb_030827_060 Hb_003349_010 Hb_003349_010 Hb_004449_050--Hb_003349_010 Hb_000340_110 Hb_000340_110 Hb_004449_050--Hb_000340_110 Hb_026198_040 Hb_026198_040 Hb_004449_050--Hb_026198_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.06569 7.08824 0.596712 0.658972 3.34239 3.08947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.32484 0.127577 0.421335 1.02028 0.46394

CAGE analysis