Hb_002609_090

Information

Type -
Description -
Location Contig2609: 75503-78680
Sequence    

Annotation

kegg
ID rcu:RCOM_0611460
description catalytic, putative
nr
ID XP_012068014.1
description PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID O82392
description Phosphomethylpyrimidine synthase, chloroplastic OS=Arabidopsis thaliana GN=THIC PE=1 SV=1
trembl
ID A0A067LDP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08499 PE=3 SV=1
Gene Ontology
ID GO:0051536
description isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27183: 67641-74560 , PASA_asmbl_27184: 75472-79870 , PASA_asmbl_27185: 75472-79138
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_090 0.0 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_003633_140 0.1255523563 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
3 Hb_164010_070 0.1329231233 - - Paramyosin, putative [Ricinus communis]
4 Hb_000340_110 0.1368261721 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
5 Hb_000032_310 0.1395116701 - - ring finger protein, putative [Ricinus communis]
6 Hb_144824_010 0.1475995068 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
7 Hb_006683_040 0.1477194443 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
8 Hb_000521_170 0.1486629563 - - PREDICTED: callose synthase 1 [Jatropha curcas]
9 Hb_018133_030 0.149596798 - - Heme-binding protein, putative [Ricinus communis]
10 Hb_001225_090 0.1554009069 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
11 Hb_000932_070 0.1560595706 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
12 Hb_000123_330 0.1566848387 - - hypothetical protein M569_14136, partial [Genlisea aurea]
13 Hb_012799_120 0.1569449926 - - PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]
14 Hb_004449_050 0.1618558248 - - PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Jatropha curcas]
15 Hb_012226_010 0.1659329621 - - PREDICTED: protein DGCR14 [Jatropha curcas]
16 Hb_001504_190 0.1666661858 - - double-stranded RNA binding protein, putative [Ricinus communis]
17 Hb_002273_050 0.1666824738 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
18 Hb_001053_030 0.1675745699 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
19 Hb_006185_020 0.1686168039 - - PREDICTED: midasin [Jatropha curcas]
20 Hb_000449_050 0.1687248068 - - Protein bem46, putative [Ricinus communis]

Gene co-expression network

sample Hb_002609_090 Hb_002609_090 Hb_003633_140 Hb_003633_140 Hb_002609_090--Hb_003633_140 Hb_164010_070 Hb_164010_070 Hb_002609_090--Hb_164010_070 Hb_000340_110 Hb_000340_110 Hb_002609_090--Hb_000340_110 Hb_000032_310 Hb_000032_310 Hb_002609_090--Hb_000032_310 Hb_144824_010 Hb_144824_010 Hb_002609_090--Hb_144824_010 Hb_006683_040 Hb_006683_040 Hb_002609_090--Hb_006683_040 Hb_028795_010 Hb_028795_010 Hb_003633_140--Hb_028795_010 Hb_002316_050 Hb_002316_050 Hb_003633_140--Hb_002316_050 Hb_001999_250 Hb_001999_250 Hb_003633_140--Hb_001999_250 Hb_007257_050 Hb_007257_050 Hb_003633_140--Hb_007257_050 Hb_031089_030 Hb_031089_030 Hb_003633_140--Hb_031089_030 Hb_164010_070--Hb_000340_110 Hb_164010_070--Hb_144824_010 Hb_124677_060 Hb_124677_060 Hb_164010_070--Hb_124677_060 Hb_164010_070--Hb_006683_040 Hb_001053_030 Hb_001053_030 Hb_164010_070--Hb_001053_030 Hb_000932_070 Hb_000932_070 Hb_164010_070--Hb_000932_070 Hb_029223_050 Hb_029223_050 Hb_000340_110--Hb_029223_050 Hb_001141_370 Hb_001141_370 Hb_000340_110--Hb_001141_370 Hb_001511_110 Hb_001511_110 Hb_000340_110--Hb_001511_110 Hb_000544_060 Hb_000544_060 Hb_000340_110--Hb_000544_060 Hb_026198_040 Hb_026198_040 Hb_000340_110--Hb_026198_040 Hb_000340_110--Hb_144824_010 Hb_000521_170 Hb_000521_170 Hb_000032_310--Hb_000521_170 Hb_006185_020 Hb_006185_020 Hb_000032_310--Hb_006185_020 Hb_000808_070 Hb_000808_070 Hb_000032_310--Hb_000808_070 Hb_003157_010 Hb_003157_010 Hb_000032_310--Hb_003157_010 Hb_000032_310--Hb_144824_010 Hb_001989_020 Hb_001989_020 Hb_000032_310--Hb_001989_020 Hb_000832_320 Hb_000832_320 Hb_144824_010--Hb_000832_320 Hb_144824_010--Hb_001511_110 Hb_005946_170 Hb_005946_170 Hb_144824_010--Hb_005946_170 Hb_144824_010--Hb_029223_050 Hb_006683_040--Hb_000932_070 Hb_018301_010 Hb_018301_010 Hb_006683_040--Hb_018301_010 Hb_006683_040--Hb_000340_110 Hb_004218_090 Hb_004218_090 Hb_006683_040--Hb_004218_090 Hb_000061_490 Hb_000061_490 Hb_006683_040--Hb_000061_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3232 46.5511 4.27949 4.80242 25.0613 13.9395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.36639 6.64234 4.56935 18.707 2.39071

CAGE analysis