Hb_009372_010

Information

Type -
Description -
Location Contig9372: 23329-30336
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63011: 23235-30231 , PASA_asmbl_63014: 26643-26895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009372_010 0.0 - - -
2 Hb_028795_010 0.1308656023 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
3 Hb_001114_230 0.1380510761 - - -
4 Hb_021576_140 0.1845582606 - - PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like [Jatropha curcas]
5 Hb_007481_030 0.1886320057 - - PREDICTED: uncharacterized protein LOC105628433 [Jatropha curcas]
6 Hb_153161_010 0.1893711083 - - phospholipid-transporting atpase, putative [Ricinus communis]
7 Hb_003633_140 0.1905122278 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
8 Hb_002316_050 0.1908280742 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007223_010 0.1928398418 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000834_240 0.1931200022 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
11 Hb_178127_010 0.1946797255 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
12 Hb_002086_030 0.1966292575 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
13 Hb_000836_370 0.2063239566 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
14 Hb_012725_040 0.2087288824 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
15 Hb_001231_080 0.2105978357 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
16 Hb_001307_010 0.2107041405 - - PREDICTED: uncharacterized protein LOC103939917 [Pyrus x bretschneideri]
17 Hb_128695_030 0.2120895485 - - heat shock protein, putative [Ricinus communis]
18 Hb_001584_220 0.2120901499 - - galactinol synthase [Manihot esculenta]
19 Hb_012226_010 0.2125372551 - - PREDICTED: protein DGCR14 [Jatropha curcas]
20 Hb_026198_040 0.2129786869 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]

Gene co-expression network

sample Hb_009372_010 Hb_009372_010 Hb_028795_010 Hb_028795_010 Hb_009372_010--Hb_028795_010 Hb_001114_230 Hb_001114_230 Hb_009372_010--Hb_001114_230 Hb_021576_140 Hb_021576_140 Hb_009372_010--Hb_021576_140 Hb_007481_030 Hb_007481_030 Hb_009372_010--Hb_007481_030 Hb_153161_010 Hb_153161_010 Hb_009372_010--Hb_153161_010 Hb_003633_140 Hb_003633_140 Hb_009372_010--Hb_003633_140 Hb_028795_010--Hb_003633_140 Hb_002316_050 Hb_002316_050 Hb_028795_010--Hb_002316_050 Hb_018133_030 Hb_018133_030 Hb_028795_010--Hb_018133_030 Hb_000808_070 Hb_000808_070 Hb_028795_010--Hb_000808_070 Hb_004449_050 Hb_004449_050 Hb_028795_010--Hb_004449_050 Hb_000836_370 Hb_000836_370 Hb_001114_230--Hb_000836_370 Hb_000834_240 Hb_000834_240 Hb_001114_230--Hb_000834_240 Hb_003506_070 Hb_003506_070 Hb_001114_230--Hb_003506_070 Hb_012725_040 Hb_012725_040 Hb_001114_230--Hb_012725_040 Hb_080147_080 Hb_080147_080 Hb_001114_230--Hb_080147_080 Hb_005203_020 Hb_005203_020 Hb_021576_140--Hb_005203_020 Hb_178127_010 Hb_178127_010 Hb_021576_140--Hb_178127_010 Hb_001369_770 Hb_001369_770 Hb_021576_140--Hb_001369_770 Hb_012038_010 Hb_012038_010 Hb_021576_140--Hb_012038_010 Hb_000152_640 Hb_000152_640 Hb_021576_140--Hb_000152_640 Hb_000123_350 Hb_000123_350 Hb_021576_140--Hb_000123_350 Hb_002370_040 Hb_002370_040 Hb_007481_030--Hb_002370_040 Hb_143960_010 Hb_143960_010 Hb_007481_030--Hb_143960_010 Hb_007223_010 Hb_007223_010 Hb_007481_030--Hb_007223_010 Hb_167381_020 Hb_167381_020 Hb_007481_030--Hb_167381_020 Hb_000120_520 Hb_000120_520 Hb_007481_030--Hb_000120_520 Hb_002997_160 Hb_002997_160 Hb_007481_030--Hb_002997_160 Hb_001565_020 Hb_001565_020 Hb_153161_010--Hb_001565_020 Hb_153161_010--Hb_178127_010 Hb_128695_030 Hb_128695_030 Hb_153161_010--Hb_128695_030 Hb_021530_010 Hb_021530_010 Hb_153161_010--Hb_021530_010 Hb_003096_040 Hb_003096_040 Hb_153161_010--Hb_003096_040 Hb_002942_110 Hb_002942_110 Hb_153161_010--Hb_002942_110 Hb_002609_090 Hb_002609_090 Hb_003633_140--Hb_002609_090 Hb_003633_140--Hb_002316_050 Hb_001999_250 Hb_001999_250 Hb_003633_140--Hb_001999_250 Hb_007257_050 Hb_007257_050 Hb_003633_140--Hb_007257_050 Hb_031089_030 Hb_031089_030 Hb_003633_140--Hb_031089_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6096 95.5322 22.6895 8.38333 33.0178 48.0915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.44013 2.19205 6.27662 7.69922 5.06247

CAGE analysis