Hb_082945_020

Information

Type -
Description -
Location Contig82945: 6254-7519
Sequence    

Annotation

kegg
ID vvi:104878334
description pentatricopeptide repeat-containing protein At5g66520-like
nr
ID XP_012074042.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
swissprot
ID O49399
description Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
trembl
ID M5Y0G5
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025518mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_082945_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
2 Hb_033926_010 0.2302734878 - - -
3 Hb_000834_240 0.2317291991 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
4 Hb_005203_050 0.2459242685 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
5 Hb_080147_080 0.2466553604 - - peroxiredoxin, putative [Ricinus communis]
6 Hb_000571_150 0.2480470889 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
7 Hb_001059_080 0.2499626807 - - PREDICTED: F-box protein At1g61340-like [Musa acuminata subsp. malaccensis]
8 Hb_002316_050 0.2550570995 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003222_010 0.2559038519 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_116638_010 0.2568619311 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006816_340 0.2579756401 - - -
12 Hb_000181_440 0.2601885577 - - -
13 Hb_179679_010 0.2614109608 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
14 Hb_006420_020 0.2646801332 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
15 Hb_144550_020 0.2670851571 - - -
16 Hb_001950_020 0.2672226242 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
17 Hb_181975_010 0.2679848252 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
18 Hb_009372_010 0.2684800746 - - -
19 Hb_011164_010 0.2695790535 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
20 Hb_079733_010 0.2700865055 - - -

Gene co-expression network

sample Hb_082945_020 Hb_082945_020 Hb_033926_010 Hb_033926_010 Hb_082945_020--Hb_033926_010 Hb_000834_240 Hb_000834_240 Hb_082945_020--Hb_000834_240 Hb_005203_050 Hb_005203_050 Hb_082945_020--Hb_005203_050 Hb_080147_080 Hb_080147_080 Hb_082945_020--Hb_080147_080 Hb_000571_150 Hb_000571_150 Hb_082945_020--Hb_000571_150 Hb_001059_080 Hb_001059_080 Hb_082945_020--Hb_001059_080 Hb_000181_440 Hb_000181_440 Hb_033926_010--Hb_000181_440 Hb_033926_010--Hb_005203_050 Hb_007223_010 Hb_007223_010 Hb_033926_010--Hb_007223_010 Hb_009189_030 Hb_009189_030 Hb_033926_010--Hb_009189_030 Hb_009372_010 Hb_009372_010 Hb_033926_010--Hb_009372_010 Hb_000836_370 Hb_000836_370 Hb_000834_240--Hb_000836_370 Hb_001114_230 Hb_001114_230 Hb_000834_240--Hb_001114_230 Hb_000152_640 Hb_000152_640 Hb_000834_240--Hb_000152_640 Hb_000179_180 Hb_000179_180 Hb_000834_240--Hb_000179_180 Hb_001950_020 Hb_001950_020 Hb_000834_240--Hb_001950_020 Hb_005054_310 Hb_005054_310 Hb_000834_240--Hb_005054_310 Hb_000062_500 Hb_000062_500 Hb_005203_050--Hb_000062_500 Hb_032018_010 Hb_032018_010 Hb_005203_050--Hb_032018_010 Hb_005203_050--Hb_009189_030 Hb_009922_010 Hb_009922_010 Hb_005203_050--Hb_009922_010 Hb_053643_010 Hb_053643_010 Hb_005203_050--Hb_053643_010 Hb_006420_020 Hb_006420_020 Hb_080147_080--Hb_006420_020 Hb_075449_020 Hb_075449_020 Hb_080147_080--Hb_075449_020 Hb_128376_010 Hb_128376_010 Hb_080147_080--Hb_128376_010 Hb_000390_220 Hb_000390_220 Hb_080147_080--Hb_000390_220 Hb_000878_100 Hb_000878_100 Hb_080147_080--Hb_000878_100 Hb_002742_080 Hb_002742_080 Hb_080147_080--Hb_002742_080 Hb_000571_150--Hb_006420_020 Hb_100525_010 Hb_100525_010 Hb_000571_150--Hb_100525_010 Hb_059641_010 Hb_059641_010 Hb_000571_150--Hb_059641_010 Hb_006745_010 Hb_006745_010 Hb_000571_150--Hb_006745_010 Hb_049958_010 Hb_049958_010 Hb_000571_150--Hb_049958_010 Hb_000979_240 Hb_000979_240 Hb_000571_150--Hb_000979_240 Hb_000538_010 Hb_000538_010 Hb_001059_080--Hb_000538_010 Hb_000152_510 Hb_000152_510 Hb_001059_080--Hb_000152_510 Hb_001307_010 Hb_001307_010 Hb_001059_080--Hb_001307_010 Hb_001059_080--Hb_000390_220 Hb_013394_060 Hb_013394_060 Hb_001059_080--Hb_013394_060 Hb_000122_250 Hb_000122_250 Hb_001059_080--Hb_000122_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.163741 0.738515 0.125325 0.260712 0.525727 0.626836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0415651 0.0653906 0 0 0

CAGE analysis