Hb_002240_100

Information

Type -
Description -
Location Contig2240: 44126-48898
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002240_100 0.0 - - -
2 Hb_001524_100 0.0749306614 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
3 Hb_001226_080 0.1534093966 - - heat-shock protein, putative [Ricinus communis]
4 Hb_003847_010 0.1851431852 - - -
5 Hb_000174_280 0.2243935723 - - -
6 Hb_152439_010 0.2643527583 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
7 Hb_178613_010 0.2842644559 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
8 Hb_002188_020 0.2887444852 - - unnamed protein product [Vitis vinifera]
9 Hb_008473_010 0.2987105701 - - PREDICTED: laccase-14-like [Jatropha curcas]
10 Hb_091369_010 0.298711735 - - -
11 Hb_002673_050 0.2987234499 - - -
12 Hb_000944_010 0.2988872852 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
13 Hb_003400_030 0.298890521 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
14 Hb_002400_450 0.2990807518 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
15 Hb_000260_190 0.2992055757 - - -
16 Hb_034667_010 0.299459689 - - -
17 Hb_008151_030 0.2999614274 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_010399_020 0.3003237114 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
19 Hb_108404_010 0.3027005956 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_013205_010 0.3050653429 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]

Gene co-expression network

sample Hb_002240_100 Hb_002240_100 Hb_001524_100 Hb_001524_100 Hb_002240_100--Hb_001524_100 Hb_001226_080 Hb_001226_080 Hb_002240_100--Hb_001226_080 Hb_003847_010 Hb_003847_010 Hb_002240_100--Hb_003847_010 Hb_000174_280 Hb_000174_280 Hb_002240_100--Hb_000174_280 Hb_152439_010 Hb_152439_010 Hb_002240_100--Hb_152439_010 Hb_178613_010 Hb_178613_010 Hb_002240_100--Hb_178613_010 Hb_001524_100--Hb_001226_080 Hb_001524_100--Hb_003847_010 Hb_001524_100--Hb_000174_280 Hb_005803_020 Hb_005803_020 Hb_001524_100--Hb_005803_020 Hb_001524_100--Hb_152439_010 Hb_001226_080--Hb_003847_010 Hb_013205_010 Hb_013205_010 Hb_001226_080--Hb_013205_010 Hb_027394_010 Hb_027394_010 Hb_001226_080--Hb_027394_010 Hb_068347_020 Hb_068347_020 Hb_001226_080--Hb_068347_020 Hb_009066_010 Hb_009066_010 Hb_001226_080--Hb_009066_010 Hb_003847_010--Hb_000174_280 Hb_012340_040 Hb_012340_040 Hb_003847_010--Hb_012340_040 Hb_004829_020 Hb_004829_020 Hb_003847_010--Hb_004829_020 Hb_003847_010--Hb_152439_010 Hb_000174_280--Hb_012340_040 Hb_000174_280--Hb_004829_020 Hb_000174_280--Hb_001226_080 Hb_062858_010 Hb_062858_010 Hb_000174_280--Hb_062858_010 Hb_000364_110 Hb_000364_110 Hb_152439_010--Hb_000364_110 Hb_152439_010--Hb_000174_280 Hb_152439_010--Hb_001226_080 Hb_002986_120 Hb_002986_120 Hb_178613_010--Hb_002986_120 Hb_061365_010 Hb_061365_010 Hb_178613_010--Hb_061365_010 Hb_137515_010 Hb_137515_010 Hb_178613_010--Hb_137515_010 Hb_178613_010--Hb_001226_080 Hb_178613_010--Hb_003847_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.119852 0.10679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0455709 0

CAGE analysis