Hb_002400_450

Information

Type -
Description -
Location Contig2400: 314384-316237
Sequence    

Annotation

kegg
ID mdm:103437396
description protein MEMO1-like
nr
ID XP_011081515.1
description PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
swissprot
ID Q4QQR9
description Protein MEMO1 OS=Rattus norvegicus GN=Memo1 PE=2 SV=1
trembl
ID A0A0A9RZ23
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25201: 316783-318623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_450 0.0 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
2 Hb_000260_190 0.0024424573 - - -
3 Hb_003400_030 0.0047271277 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
4 Hb_000944_010 0.0048254115 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
5 Hb_034667_010 0.0066021582 - - -
6 Hb_008151_030 0.0131043172 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_008473_010 0.0155042595 - - PREDICTED: laccase-14-like [Jatropha curcas]
8 Hb_091369_010 0.0164874065 - - -
9 Hb_010399_020 0.0170084444 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
10 Hb_002673_050 0.0185179392 - - -
11 Hb_013205_010 0.0493894272 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
12 Hb_108404_010 0.0669658877 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_128287_010 0.0856885486 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_027394_010 0.1263362607 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
15 Hb_068347_020 0.1263574413 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_000204_180 0.1268736485 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
17 Hb_009066_010 0.1314246309 - - -
18 Hb_021068_020 0.1521314264 - - -
19 Hb_000227_110 0.1544807667 - - hypothetical protein CICLE_v10010500mg, partial [Citrus clementina]
20 Hb_002141_010 0.1660964651 - - UDP-glucuronosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002400_450 Hb_002400_450 Hb_000260_190 Hb_000260_190 Hb_002400_450--Hb_000260_190 Hb_003400_030 Hb_003400_030 Hb_002400_450--Hb_003400_030 Hb_000944_010 Hb_000944_010 Hb_002400_450--Hb_000944_010 Hb_034667_010 Hb_034667_010 Hb_002400_450--Hb_034667_010 Hb_008151_030 Hb_008151_030 Hb_002400_450--Hb_008151_030 Hb_008473_010 Hb_008473_010 Hb_002400_450--Hb_008473_010 Hb_000260_190--Hb_034667_010 Hb_000260_190--Hb_003400_030 Hb_000260_190--Hb_000944_010 Hb_000260_190--Hb_008151_030 Hb_010399_020 Hb_010399_020 Hb_000260_190--Hb_010399_020 Hb_003400_030--Hb_000944_010 Hb_003400_030--Hb_008473_010 Hb_003400_030--Hb_034667_010 Hb_091369_010 Hb_091369_010 Hb_003400_030--Hb_091369_010 Hb_000944_010--Hb_008473_010 Hb_000944_010--Hb_034667_010 Hb_000944_010--Hb_091369_010 Hb_034667_010--Hb_008151_030 Hb_034667_010--Hb_010399_020 Hb_008151_030--Hb_010399_020 Hb_008151_030--Hb_003400_030 Hb_008151_030--Hb_000944_010 Hb_008473_010--Hb_091369_010 Hb_002673_050 Hb_002673_050 Hb_008473_010--Hb_002673_050 Hb_008473_010--Hb_000260_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.128396 0.123136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis