Hb_000260_190

Information

Type -
Description -
Location Contig260: 148115-149513
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_190 0.0 - - -
2 Hb_002400_450 0.0024424573 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
3 Hb_034667_010 0.0041597242 - - -
4 Hb_003400_030 0.0071695563 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
5 Hb_000944_010 0.0072678392 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
6 Hb_008151_030 0.0106619781 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_010399_020 0.0145661968 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
8 Hb_008473_010 0.0179464809 - - PREDICTED: laccase-14-like [Jatropha curcas]
9 Hb_091369_010 0.0189295991 - - -
10 Hb_002673_050 0.0209600673 - - -
11 Hb_013205_010 0.0469489343 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
12 Hb_108404_010 0.06940437 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_128287_010 0.0881245174 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_027394_010 0.1239072294 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
15 Hb_068347_020 0.1239284146 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_009066_010 0.1289967334 - - -
17 Hb_000204_180 0.1293018208 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
18 Hb_021068_020 0.1497086481 - - -
19 Hb_000227_110 0.1569018799 - - hypothetical protein CICLE_v10010500mg, partial [Citrus clementina]
20 Hb_136856_010 0.1675249711 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]

Gene co-expression network

sample Hb_000260_190 Hb_000260_190 Hb_002400_450 Hb_002400_450 Hb_000260_190--Hb_002400_450 Hb_034667_010 Hb_034667_010 Hb_000260_190--Hb_034667_010 Hb_003400_030 Hb_003400_030 Hb_000260_190--Hb_003400_030 Hb_000944_010 Hb_000944_010 Hb_000260_190--Hb_000944_010 Hb_008151_030 Hb_008151_030 Hb_000260_190--Hb_008151_030 Hb_010399_020 Hb_010399_020 Hb_000260_190--Hb_010399_020 Hb_002400_450--Hb_003400_030 Hb_002400_450--Hb_000944_010 Hb_002400_450--Hb_034667_010 Hb_002400_450--Hb_008151_030 Hb_008473_010 Hb_008473_010 Hb_002400_450--Hb_008473_010 Hb_034667_010--Hb_008151_030 Hb_034667_010--Hb_010399_020 Hb_034667_010--Hb_003400_030 Hb_034667_010--Hb_000944_010 Hb_003400_030--Hb_000944_010 Hb_003400_030--Hb_008473_010 Hb_091369_010 Hb_091369_010 Hb_003400_030--Hb_091369_010 Hb_000944_010--Hb_008473_010 Hb_000944_010--Hb_091369_010 Hb_008151_030--Hb_010399_020 Hb_008151_030--Hb_003400_030 Hb_008151_030--Hb_000944_010 Hb_010399_020--Hb_002400_450 Hb_010399_020--Hb_003400_030 Hb_010399_020--Hb_000944_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0884544 0.0858123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis