Hb_004800_110

Information

Type -
Description -
Location Contig4800: 83772-86758
Sequence    

Annotation

kegg
ID rcu:RCOM_0536140
description somatic embryogenesis receptor kinase, putative (EC:2.7.11.16)
nr
ID XP_012072040.1
description PREDICTED: proline-rich receptor-like protein kinase PERK4 [Jatropha curcas]
swissprot
ID Q9ZNQ8
description Proline-rich receptor-like protein kinase PERK4 OS=Arabidopsis thaliana GN=PERK4 PE=1 SV=1
trembl
ID B9S6F8
description Somatic embryogenesis receptor kinase, putative OS=Ricinus communis GN=RCOM_0536140 PE=3 SV=1
Gene Ontology
ID GO:0005622
description proline-rich receptor-like protein kinase perk4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_110 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK4 [Jatropha curcas]
2 Hb_002710_020 0.0063099871 - - -
3 Hb_007694_030 0.0238365668 - - hypothetical protein SORBIDRAFT_04g037485 [Sorghum bicolor]
4 Hb_003811_010 0.1274848985 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
5 Hb_000069_080 0.1363372671 - - PREDICTED: laccase-6 [Jatropha curcas]
6 Hb_002485_020 0.1381601045 - - metal transport family protein [Populus trichocarpa]
7 Hb_002835_130 0.1487512221 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
8 Hb_010863_040 0.1592496811 - - PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
9 Hb_001825_050 0.1646065033 - - -
10 Hb_000224_110 0.2519811602 - - -
11 Hb_001369_310 0.3166311195 - - tonoplast intrinsic protein, putative [Ricinus communis]
12 Hb_030736_110 0.3177878884 - - -
13 Hb_143643_010 0.3595057752 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC103967596 [Pyrus x bretschneideri]
14 Hb_005803_020 0.3626913989 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
15 Hb_151497_010 0.3674125631 - - -
16 Hb_007101_220 0.3754702444 - - Gibberellin-regulated protein 3 precursor, putative [Ricinus communis]
17 Hb_000230_070 0.3931187789 - - Galactose oxidase precursor, putative [Ricinus communis]
18 Hb_003866_010 0.4036622743 - - Polyprotein, putative [Solanum demissum]
19 Hb_000445_340 0.40379834 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000053_090 0.4039080705 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Populus euphratica]

Gene co-expression network

sample Hb_004800_110 Hb_004800_110 Hb_002710_020 Hb_002710_020 Hb_004800_110--Hb_002710_020 Hb_007694_030 Hb_007694_030 Hb_004800_110--Hb_007694_030 Hb_003811_010 Hb_003811_010 Hb_004800_110--Hb_003811_010 Hb_000069_080 Hb_000069_080 Hb_004800_110--Hb_000069_080 Hb_002485_020 Hb_002485_020 Hb_004800_110--Hb_002485_020 Hb_002835_130 Hb_002835_130 Hb_004800_110--Hb_002835_130 Hb_002710_020--Hb_007694_030 Hb_002710_020--Hb_000069_080 Hb_002710_020--Hb_003811_010 Hb_002710_020--Hb_002835_130 Hb_002710_020--Hb_002485_020 Hb_007694_030--Hb_000069_080 Hb_007694_030--Hb_002835_130 Hb_001825_050 Hb_001825_050 Hb_007694_030--Hb_001825_050 Hb_007694_030--Hb_003811_010 Hb_003811_010--Hb_002485_020 Hb_003811_010--Hb_000069_080 Hb_003811_010--Hb_001825_050 Hb_000069_080--Hb_002835_130 Hb_010863_040 Hb_010863_040 Hb_000069_080--Hb_010863_040 Hb_000224_110 Hb_000224_110 Hb_000069_080--Hb_000224_110 Hb_002485_020--Hb_007694_030 Hb_002485_020--Hb_000069_080 Hb_002485_020--Hb_001825_050 Hb_002835_130--Hb_010863_040 Hb_002835_130--Hb_000224_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00864606 0 0.0116556 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00829926 0

CAGE analysis