Hb_002835_130

Information

Type -
Description -
Location Contig2835: 99869-107132
Sequence    

Annotation

kegg
ID sly:104647507
description uncharacterized LOC104647507
nr
ID XP_010321238.1
description PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_130 0.0 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
2 Hb_010863_040 0.0131232603 - - PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
3 Hb_000069_080 0.0169798432 - - PREDICTED: laccase-6 [Jatropha curcas]
4 Hb_007694_030 0.1421179958 - - hypothetical protein SORBIDRAFT_04g037485 [Sorghum bicolor]
5 Hb_002710_020 0.142851321 - - -
6 Hb_004800_110 0.1487512221 - - PREDICTED: proline-rich receptor-like protein kinase PERK4 [Jatropha curcas]
7 Hb_000224_110 0.2225573794 - - -
8 Hb_003811_010 0.2522758193 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
9 Hb_002485_020 0.2610899379 - - metal transport family protein [Populus trichocarpa]
10 Hb_001825_050 0.2614258698 - - -
11 Hb_151497_010 0.3102080672 - - -
12 Hb_004453_200 0.3161668693 - - Boron transporter, putative [Ricinus communis]
13 Hb_000982_040 0.3431940437 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007101_220 0.3676184848 - - Gibberellin-regulated protein 3 precursor, putative [Ricinus communis]
15 Hb_002120_020 0.3707881825 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
16 Hb_184484_010 0.3708342414 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_027846_010 0.3710683543 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_038005_010 0.3713382108 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
19 Hb_181476_010 0.3769427334 - - -
20 Hb_004117_300 0.3789744309 - - -

Gene co-expression network

sample Hb_002835_130 Hb_002835_130 Hb_010863_040 Hb_010863_040 Hb_002835_130--Hb_010863_040 Hb_000069_080 Hb_000069_080 Hb_002835_130--Hb_000069_080 Hb_007694_030 Hb_007694_030 Hb_002835_130--Hb_007694_030 Hb_002710_020 Hb_002710_020 Hb_002835_130--Hb_002710_020 Hb_004800_110 Hb_004800_110 Hb_002835_130--Hb_004800_110 Hb_000224_110 Hb_000224_110 Hb_002835_130--Hb_000224_110 Hb_010863_040--Hb_000069_080 Hb_010863_040--Hb_002710_020 Hb_010863_040--Hb_007694_030 Hb_010863_040--Hb_004800_110 Hb_010863_040--Hb_000224_110 Hb_000069_080--Hb_002710_020 Hb_000069_080--Hb_007694_030 Hb_000069_080--Hb_004800_110 Hb_000069_080--Hb_000224_110 Hb_007694_030--Hb_002710_020 Hb_007694_030--Hb_004800_110 Hb_001825_050 Hb_001825_050 Hb_007694_030--Hb_001825_050 Hb_003811_010 Hb_003811_010 Hb_007694_030--Hb_003811_010 Hb_002710_020--Hb_004800_110 Hb_002710_020--Hb_003811_010 Hb_002485_020 Hb_002485_020 Hb_002710_020--Hb_002485_020 Hb_004800_110--Hb_003811_010 Hb_004800_110--Hb_002485_020 Hb_000224_110--Hb_001825_050 Hb_000224_110--Hb_007694_030 Hb_000224_110--Hb_002710_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0218958 0 0.0257856 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0401575 0

CAGE analysis