Hb_003811_010

Information

Type -
Description -
Location Contig3811: 12749-16046
Sequence    

Annotation

kegg
ID cit:102611294
description uncharacterized LOC102611294
nr
ID XP_006480387.1
description PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID I7AYD2
description Retropepsin-like protein OS=Phaseolus vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003811_010 0.0 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
2 Hb_002485_020 0.0108604101 - - metal transport family protein [Populus trichocarpa]
3 Hb_004800_110 0.1274848985 - - PREDICTED: proline-rich receptor-like protein kinase PERK4 [Jatropha curcas]
4 Hb_002710_020 0.1330828246 - - -
5 Hb_007694_030 0.1495758679 - - hypothetical protein SORBIDRAFT_04g037485 [Sorghum bicolor]
6 Hb_000069_080 0.2366323995 - - PREDICTED: laccase-6 [Jatropha curcas]
7 Hb_001825_050 0.2412066575 - - -
8 Hb_002835_130 0.2522758193 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
9 Hb_010863_040 0.2590299456 - - PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
10 Hb_005803_020 0.3113878575 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
11 Hb_001369_310 0.3167516392 - - tonoplast intrinsic protein, putative [Ricinus communis]
12 Hb_030736_110 0.3252284913 - - -
13 Hb_000465_200 0.3383195792 - - PREDICTED: protein NSP-INTERACTING KINASE 1 [Jatropha curcas]
14 Hb_002001_040 0.3383579749 - - hypothetical protein CISIN_1g044945mg, partial [Citrus sinensis]
15 Hb_000207_410 0.3383871281 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000537_110 0.3384023604 - - -
17 Hb_000163_120 0.3400122265 - - -
18 Hb_003492_030 0.3440682597 - - -
19 Hb_002659_100 0.3564966744 - - hypothetical protein OsI_37193 [Oryza sativa Indica Group]
20 Hb_111985_020 0.3564980576 - - -

Gene co-expression network

sample Hb_003811_010 Hb_003811_010 Hb_002485_020 Hb_002485_020 Hb_003811_010--Hb_002485_020 Hb_004800_110 Hb_004800_110 Hb_003811_010--Hb_004800_110 Hb_002710_020 Hb_002710_020 Hb_003811_010--Hb_002710_020 Hb_007694_030 Hb_007694_030 Hb_003811_010--Hb_007694_030 Hb_000069_080 Hb_000069_080 Hb_003811_010--Hb_000069_080 Hb_001825_050 Hb_001825_050 Hb_003811_010--Hb_001825_050 Hb_002485_020--Hb_004800_110 Hb_002485_020--Hb_002710_020 Hb_002485_020--Hb_007694_030 Hb_002485_020--Hb_000069_080 Hb_002485_020--Hb_001825_050 Hb_004800_110--Hb_002710_020 Hb_004800_110--Hb_007694_030 Hb_004800_110--Hb_000069_080 Hb_002835_130 Hb_002835_130 Hb_004800_110--Hb_002835_130 Hb_002710_020--Hb_007694_030 Hb_002710_020--Hb_000069_080 Hb_002710_020--Hb_002835_130 Hb_007694_030--Hb_000069_080 Hb_007694_030--Hb_002835_130 Hb_007694_030--Hb_001825_050 Hb_000069_080--Hb_002835_130 Hb_010863_040 Hb_010863_040 Hb_000069_080--Hb_010863_040 Hb_000224_110 Hb_000224_110 Hb_000069_080--Hb_000224_110 Hb_001825_050--Hb_004800_110 Hb_001825_050--Hb_002710_020 Hb_001825_050--Hb_000224_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00590029 0 0.0141562 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00536161 0

CAGE analysis