Hb_002485_020

Information

Type -
Description -
Location Contig2485: 41274-42992
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18050g
description POPTRDRAFT_805363; metal transport family protein
nr
ID XP_002315075.2
description metal transport family protein [Populus trichocarpa]
swissprot
ID O81123
description Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1
trembl
ID B9HY43
description Metal transport family protein OS=Populus trichocarpa GN=POPTR_0010s18050g PE=4 SV=2
Gene Ontology
ID GO:0016020
description zinc transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002485_020 0.0 - - metal transport family protein [Populus trichocarpa]
2 Hb_003811_010 0.0108604101 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
3 Hb_004800_110 0.1381601045 - - PREDICTED: proline-rich receptor-like protein kinase PERK4 [Jatropha curcas]
4 Hb_002710_020 0.1437159852 - - -
5 Hb_007694_030 0.1603030307 - - hypothetical protein SORBIDRAFT_04g037485 [Sorghum bicolor]
6 Hb_000069_080 0.2453407279 - - PREDICTED: laccase-6 [Jatropha curcas]
7 Hb_001825_050 0.2503762491 - - -
8 Hb_002835_130 0.2610899379 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
9 Hb_010863_040 0.2675645447 - - PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
10 Hb_005803_020 0.3087574832 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
11 Hb_001369_310 0.3193496392 - - tonoplast intrinsic protein, putative [Ricinus communis]
12 Hb_030736_110 0.3283638154 - - -
13 Hb_000537_110 0.3336704363 - - -
14 Hb_000207_410 0.3336761925 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002001_040 0.3336952013 - - hypothetical protein CISIN_1g044945mg, partial [Citrus sinensis]
16 Hb_000465_200 0.3338373423 - - PREDICTED: protein NSP-INTERACTING KINASE 1 [Jatropha curcas]
17 Hb_000163_120 0.336525985 - - -
18 Hb_003492_030 0.3414650174 - - -
19 Hb_011010_010 0.350286172 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_011639_140 0.3502882655 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]

Gene co-expression network

sample Hb_002485_020 Hb_002485_020 Hb_003811_010 Hb_003811_010 Hb_002485_020--Hb_003811_010 Hb_004800_110 Hb_004800_110 Hb_002485_020--Hb_004800_110 Hb_002710_020 Hb_002710_020 Hb_002485_020--Hb_002710_020 Hb_007694_030 Hb_007694_030 Hb_002485_020--Hb_007694_030 Hb_000069_080 Hb_000069_080 Hb_002485_020--Hb_000069_080 Hb_001825_050 Hb_001825_050 Hb_002485_020--Hb_001825_050 Hb_003811_010--Hb_004800_110 Hb_003811_010--Hb_002710_020 Hb_003811_010--Hb_007694_030 Hb_003811_010--Hb_000069_080 Hb_003811_010--Hb_001825_050 Hb_004800_110--Hb_002710_020 Hb_004800_110--Hb_007694_030 Hb_004800_110--Hb_000069_080 Hb_002835_130 Hb_002835_130 Hb_004800_110--Hb_002835_130 Hb_002710_020--Hb_007694_030 Hb_002710_020--Hb_000069_080 Hb_002710_020--Hb_002835_130 Hb_007694_030--Hb_000069_080 Hb_007694_030--Hb_002835_130 Hb_007694_030--Hb_001825_050 Hb_000069_080--Hb_002835_130 Hb_010863_040 Hb_010863_040 Hb_000069_080--Hb_010863_040 Hb_000224_110 Hb_000224_110 Hb_000069_080--Hb_000224_110 Hb_001825_050--Hb_004800_110 Hb_001825_050--Hb_002710_020 Hb_001825_050--Hb_000224_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0174785 0 0.0442847 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0159876 0

CAGE analysis