Hb_007694_030

Information

Type -
Description -
Location Contig7694: 62383-63707
Sequence    

Annotation

kegg
ID sbi:SORBI_04g037485
description SORBIDRAFT_04g037485, Sb04g037485; hypothetical protein
nr
ID XP_002453054.1
description hypothetical protein SORBIDRAFT_04g037485 [Sorghum bicolor]
swissprot
ID -
description -
trembl
ID I1IKJ6
description Uncharacterized protein OS=Brachypodium distachyon GN=BRADI4G14180 PE=4 SV=1
Gene Ontology
ID GO:0097159
description alanyl-trna synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007694_030 0.0 - - hypothetical protein SORBIDRAFT_04g037485 [Sorghum bicolor]
2 Hb_002710_020 0.0203958793 - - -
3 Hb_004800_110 0.0238365668 - - PREDICTED: proline-rich receptor-like protein kinase PERK4 [Jatropha curcas]
4 Hb_000069_080 0.1317500933 - - PREDICTED: laccase-6 [Jatropha curcas]
5 Hb_002835_130 0.1421179958 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
6 Hb_001825_050 0.148907258 - - -
7 Hb_003811_010 0.1495758679 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
8 Hb_010863_040 0.1536716604 - - PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
9 Hb_002485_020 0.1603030307 - - metal transport family protein [Populus trichocarpa]
10 Hb_000224_110 0.2290210222 - - -
11 Hb_030736_110 0.3184698343 - - -
12 Hb_001369_310 0.3186760526 - - tonoplast intrinsic protein, putative [Ricinus communis]
13 Hb_143643_010 0.353335378 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC103967596 [Pyrus x bretschneideri]
14 Hb_151497_010 0.369397139 - - -
15 Hb_005803_020 0.3750690673 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
16 Hb_007101_220 0.383287997 - - Gibberellin-regulated protein 3 precursor, putative [Ricinus communis]
17 Hb_000230_070 0.3840445421 - - Galactose oxidase precursor, putative [Ricinus communis]
18 Hb_000200_260 0.4078728658 - - PREDICTED: uncharacterized protein LOC104232531 isoform X2 [Nicotiana sylvestris]
19 Hb_000212_340 0.4079330608 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008014_080 0.4079555427 - - PREDICTED: uncharacterized protein LOC103848614 [Brassica rapa]

Gene co-expression network

sample Hb_007694_030 Hb_007694_030 Hb_002710_020 Hb_002710_020 Hb_007694_030--Hb_002710_020 Hb_004800_110 Hb_004800_110 Hb_007694_030--Hb_004800_110 Hb_000069_080 Hb_000069_080 Hb_007694_030--Hb_000069_080 Hb_002835_130 Hb_002835_130 Hb_007694_030--Hb_002835_130 Hb_001825_050 Hb_001825_050 Hb_007694_030--Hb_001825_050 Hb_003811_010 Hb_003811_010 Hb_007694_030--Hb_003811_010 Hb_002710_020--Hb_004800_110 Hb_002710_020--Hb_000069_080 Hb_002710_020--Hb_003811_010 Hb_002710_020--Hb_002835_130 Hb_002485_020 Hb_002485_020 Hb_002710_020--Hb_002485_020 Hb_004800_110--Hb_003811_010 Hb_004800_110--Hb_000069_080 Hb_004800_110--Hb_002485_020 Hb_004800_110--Hb_002835_130 Hb_000069_080--Hb_002835_130 Hb_010863_040 Hb_010863_040 Hb_000069_080--Hb_010863_040 Hb_000224_110 Hb_000224_110 Hb_000069_080--Hb_000224_110 Hb_002835_130--Hb_010863_040 Hb_002835_130--Hb_000224_110 Hb_001825_050--Hb_004800_110 Hb_001825_050--Hb_002710_020 Hb_001825_050--Hb_000224_110 Hb_001825_050--Hb_003811_010 Hb_001825_050--Hb_002485_020 Hb_003811_010--Hb_002485_020 Hb_003811_010--Hb_000069_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0186717 0 0.0220702 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0170907 0

CAGE analysis