Hb_004445_010

Information

Type -
Description -
Location Contig4445: 11127-14599
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16760g
description kinase family protein
nr
ID XP_006377964.1
description kinase family protein [Populus trichocarpa]
swissprot
ID C0LGR3
description Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=2 SV=1
trembl
ID U5G0K9
description Kinase family protein OS=Populus trichocarpa GN=POPTR_0011s16760g PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at4g26540

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004445_010 0.0 - - kinase family protein [Populus trichocarpa]
2 Hb_001138_030 0.2806345211 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
3 Hb_003772_040 0.2821400752 - - -
4 Hb_000260_140 0.3069114818 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
5 Hb_003494_010 0.3373246864 - - hypothetical protein JCGZ_19838 [Jatropha curcas]
6 Hb_045481_010 0.3386070003 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
7 Hb_008053_020 0.346747837 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_168893_010 0.3489335438 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
9 Hb_000088_030 0.3500827929 - - hypothetical protein JCGZ_10947 [Jatropha curcas]
10 Hb_017387_030 0.3527887567 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
11 Hb_000243_090 0.3576093961 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
12 Hb_030736_110 0.3594542724 - - -
13 Hb_184629_010 0.3595728484 - - UDP-Glycosyltransferase superfamily protein isoform 1 [Theobroma cacao]
14 Hb_149838_010 0.3630597453 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
15 Hb_004994_340 0.3671899463 - - -
16 Hb_131317_010 0.3677778932 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
17 Hb_002783_020 0.3682658932 - - PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]
18 Hb_000205_150 0.3705767633 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
19 Hb_005803_020 0.3743144961 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
20 Hb_129459_010 0.3766833127 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]

Gene co-expression network

sample Hb_004445_010 Hb_004445_010 Hb_001138_030 Hb_001138_030 Hb_004445_010--Hb_001138_030 Hb_003772_040 Hb_003772_040 Hb_004445_010--Hb_003772_040 Hb_000260_140 Hb_000260_140 Hb_004445_010--Hb_000260_140 Hb_003494_010 Hb_003494_010 Hb_004445_010--Hb_003494_010 Hb_045481_010 Hb_045481_010 Hb_004445_010--Hb_045481_010 Hb_008053_020 Hb_008053_020 Hb_004445_010--Hb_008053_020 Hb_129459_010 Hb_129459_010 Hb_001138_030--Hb_129459_010 Hb_001138_030--Hb_045481_010 Hb_000189_430 Hb_000189_430 Hb_001138_030--Hb_000189_430 Hb_011161_030 Hb_011161_030 Hb_001138_030--Hb_011161_030 Hb_002475_120 Hb_002475_120 Hb_001138_030--Hb_002475_120 Hb_001138_030--Hb_003494_010 Hb_030215_010 Hb_030215_010 Hb_003772_040--Hb_030215_010 Hb_030736_110 Hb_030736_110 Hb_003772_040--Hb_030736_110 Hb_001031_060 Hb_001031_060 Hb_003772_040--Hb_001031_060 Hb_006634_010 Hb_006634_010 Hb_003772_040--Hb_006634_010 Hb_000364_110 Hb_000364_110 Hb_003772_040--Hb_000364_110 Hb_002783_020 Hb_002783_020 Hb_000260_140--Hb_002783_020 Hb_149838_010 Hb_149838_010 Hb_000260_140--Hb_149838_010 Hb_005527_080 Hb_005527_080 Hb_000260_140--Hb_005527_080 Hb_002708_020 Hb_002708_020 Hb_000260_140--Hb_002708_020 Hb_004176_060 Hb_004176_060 Hb_000260_140--Hb_004176_060 Hb_000160_150 Hb_000160_150 Hb_000260_140--Hb_000160_150 Hb_004342_020 Hb_004342_020 Hb_003494_010--Hb_004342_020 Hb_012586_050 Hb_012586_050 Hb_003494_010--Hb_012586_050 Hb_002960_110 Hb_002960_110 Hb_003494_010--Hb_002960_110 Hb_019715_010 Hb_019715_010 Hb_003494_010--Hb_019715_010 Hb_002447_020 Hb_002447_020 Hb_003494_010--Hb_002447_020 Hb_027472_130 Hb_027472_130 Hb_003494_010--Hb_027472_130 Hb_059301_010 Hb_059301_010 Hb_045481_010--Hb_059301_010 Hb_045481_010--Hb_129459_010 Hb_000003_140 Hb_000003_140 Hb_045481_010--Hb_000003_140 Hb_000816_010 Hb_000816_010 Hb_045481_010--Hb_000816_010 Hb_167508_010 Hb_167508_010 Hb_045481_010--Hb_167508_010 Hb_011794_020 Hb_011794_020 Hb_008053_020--Hb_011794_020 Hb_009189_030 Hb_009189_030 Hb_008053_020--Hb_009189_030 Hb_009686_010 Hb_009686_010 Hb_008053_020--Hb_009686_010 Hb_027255_010 Hb_027255_010 Hb_008053_020--Hb_027255_010 Hb_125861_010 Hb_125861_010 Hb_008053_020--Hb_125861_010 Hb_000853_290 Hb_000853_290 Hb_008053_020--Hb_000853_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0173885 0 0.0846355 0.0125949 0.137482 0.0466675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis