Hb_011161_030

Information

Type -
Description -
Location Contig11161: 28229-29417
Sequence    

Annotation

kegg
ID pop:POPTR_0005s15940g
description POPTRDRAFT_818514; hypothetical protein
nr
ID XP_012078193.1
description PREDICTED: uncharacterized protein LOC105638906 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9K9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12064 PE=4 SV=1
Gene Ontology
ID GO:0090304
description PREDICTED: uncharacterized protein LOC105638906

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03520: 23311-27573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011161_030 0.0 - - PREDICTED: uncharacterized protein LOC105638906 [Jatropha curcas]
2 Hb_129459_010 0.1651923169 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
3 Hb_034310_010 0.2005013318 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
4 Hb_004495_010 0.2117444327 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
5 Hb_074184_010 0.2264536147 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
6 Hb_002374_330 0.2408019804 - - -
7 Hb_000172_490 0.2408912817 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
8 Hb_007879_010 0.2413073753 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
9 Hb_061466_020 0.2449513954 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
10 Hb_004994_130 0.247893549 transcription factor TF Family: MYB PREDICTED: myb-like protein M [Jatropha curcas]
11 Hb_014361_050 0.2492822592 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
12 Hb_000521_180 0.2493494736 - - PREDICTED: uncharacterized protein LOC105650335 [Jatropha curcas]
13 Hb_123475_020 0.2525469454 - - -
14 Hb_000540_220 0.2530883262 - - hypothetical protein JCGZ_05605 [Jatropha curcas]
15 Hb_000003_140 0.2560776747 - - hypothetical protein glysoja_047034, partial [Glycine soja]
16 Hb_007188_060 0.2632946328 - - -
17 Hb_001138_030 0.2656137343 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
18 Hb_005016_180 0.2657314051 - - phosphoglycerate kinase, putative [Ricinus communis]
19 Hb_003605_150 0.2708035427 - - chitinase family protein [Populus trichocarpa]
20 Hb_163508_010 0.2714701222 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_011161_030 Hb_011161_030 Hb_129459_010 Hb_129459_010 Hb_011161_030--Hb_129459_010 Hb_034310_010 Hb_034310_010 Hb_011161_030--Hb_034310_010 Hb_004495_010 Hb_004495_010 Hb_011161_030--Hb_004495_010 Hb_074184_010 Hb_074184_010 Hb_011161_030--Hb_074184_010 Hb_002374_330 Hb_002374_330 Hb_011161_030--Hb_002374_330 Hb_000172_490 Hb_000172_490 Hb_011161_030--Hb_000172_490 Hb_001138_030 Hb_001138_030 Hb_129459_010--Hb_001138_030 Hb_061466_020 Hb_061466_020 Hb_129459_010--Hb_061466_020 Hb_000189_430 Hb_000189_430 Hb_129459_010--Hb_000189_430 Hb_167508_010 Hb_167508_010 Hb_129459_010--Hb_167508_010 Hb_160233_020 Hb_160233_020 Hb_129459_010--Hb_160233_020 Hb_032202_130 Hb_032202_130 Hb_034310_010--Hb_032202_130 Hb_000083_110 Hb_000083_110 Hb_034310_010--Hb_000083_110 Hb_123475_020 Hb_123475_020 Hb_034310_010--Hb_123475_020 Hb_173029_030 Hb_173029_030 Hb_034310_010--Hb_173029_030 Hb_034310_010--Hb_004495_010 Hb_183192_010 Hb_183192_010 Hb_004495_010--Hb_183192_010 Hb_000521_180 Hb_000521_180 Hb_004495_010--Hb_000521_180 Hb_004495_010--Hb_123475_020 Hb_065755_020 Hb_065755_020 Hb_004495_010--Hb_065755_020 Hb_004495_010--Hb_074184_010 Hb_009979_010 Hb_009979_010 Hb_004495_010--Hb_009979_010 Hb_008203_020 Hb_008203_020 Hb_074184_010--Hb_008203_020 Hb_029689_010 Hb_029689_010 Hb_074184_010--Hb_029689_010 Hb_074184_010--Hb_065755_020 Hb_032202_050 Hb_032202_050 Hb_074184_010--Hb_032202_050 Hb_000221_230 Hb_000221_230 Hb_074184_010--Hb_000221_230 Hb_002157_250 Hb_002157_250 Hb_002374_330--Hb_002157_250 Hb_002374_330--Hb_074184_010 Hb_002374_330--Hb_008203_020 Hb_000540_220 Hb_000540_220 Hb_002374_330--Hb_000540_220 Hb_003939_020 Hb_003939_020 Hb_002374_330--Hb_003939_020 Hb_014497_030 Hb_014497_030 Hb_000172_490--Hb_014497_030 Hb_000172_490--Hb_000540_220 Hb_124951_010 Hb_124951_010 Hb_000172_490--Hb_124951_010 Hb_000172_490--Hb_000221_230 Hb_000172_490--Hb_000521_180 Hb_001269_510 Hb_001269_510 Hb_000172_490--Hb_001269_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0363782 0.135301 0.289003 0.0693599 0.0731427 0.032291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis