Hb_003939_020

Information

Type -
Description -
Location Contig3939: 17797-18237
Sequence    

Annotation

kegg
ID rcu:RCOM_1446140
description hypothetical protein
nr
ID XP_012067562.1
description PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
swissprot
ID Q9FFX4
description Zinc finger protein KNUCKLES OS=Arabidopsis thaliana GN=KNU PE=1 SV=1
trembl
ID A0A067L3N4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26841 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003939_020 0.0 - - PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
2 Hb_009773_040 0.2059716573 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000836_590 0.2258849374 - - hypothetical protein JCGZ_14318 [Jatropha curcas]
4 Hb_002374_330 0.2404513421 - - -
5 Hb_003228_070 0.2461326811 - - conserved hypothetical protein [Ricinus communis]
6 Hb_158803_020 0.2481182861 - - hypothetical protein JCGZ_12890 [Jatropha curcas]
7 Hb_181810_010 0.2543599899 - - hypothetical protein JCGZ_14167 [Jatropha curcas]
8 Hb_000173_200 0.2588197481 - - conserved hypothetical protein [Ricinus communis]
9 Hb_136850_040 0.2602783702 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_135569_010 0.2690835182 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
11 Hb_001489_040 0.2801745627 - - PREDICTED: galactose oxidase [Jatropha curcas]
12 Hb_000659_020 0.2864893232 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
13 Hb_000359_230 0.2937213848 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
14 Hb_002548_030 0.2939415849 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]
15 Hb_004032_220 0.2943156251 - - Calmodulin, putative [Ricinus communis]
16 Hb_034581_010 0.2944626112 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
17 Hb_110356_010 0.2947621653 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
18 Hb_157957_010 0.297904822 - - hypothetical protein JCGZ_10722 [Jatropha curcas]
19 Hb_027506_060 0.2982490955 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
20 Hb_002157_250 0.298403296 - - Pectinesterase-4 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003939_020 Hb_003939_020 Hb_009773_040 Hb_009773_040 Hb_003939_020--Hb_009773_040 Hb_000836_590 Hb_000836_590 Hb_003939_020--Hb_000836_590 Hb_002374_330 Hb_002374_330 Hb_003939_020--Hb_002374_330 Hb_003228_070 Hb_003228_070 Hb_003939_020--Hb_003228_070 Hb_158803_020 Hb_158803_020 Hb_003939_020--Hb_158803_020 Hb_181810_010 Hb_181810_010 Hb_003939_020--Hb_181810_010 Hb_009773_040--Hb_181810_010 Hb_005568_060 Hb_005568_060 Hb_009773_040--Hb_005568_060 Hb_016404_010 Hb_016404_010 Hb_009773_040--Hb_016404_010 Hb_012423_020 Hb_012423_020 Hb_009773_040--Hb_012423_020 Hb_136027_010 Hb_136027_010 Hb_009773_040--Hb_136027_010 Hb_000389_250 Hb_000389_250 Hb_000836_590--Hb_000389_250 Hb_000836_590--Hb_181810_010 Hb_006395_020 Hb_006395_020 Hb_000836_590--Hb_006395_020 Hb_000111_220 Hb_000111_220 Hb_000836_590--Hb_000111_220 Hb_001405_250 Hb_001405_250 Hb_000836_590--Hb_001405_250 Hb_002205_260 Hb_002205_260 Hb_000836_590--Hb_002205_260 Hb_002157_250 Hb_002157_250 Hb_002374_330--Hb_002157_250 Hb_074184_010 Hb_074184_010 Hb_002374_330--Hb_074184_010 Hb_008203_020 Hb_008203_020 Hb_002374_330--Hb_008203_020 Hb_000540_220 Hb_000540_220 Hb_002374_330--Hb_000540_220 Hb_011161_030 Hb_011161_030 Hb_002374_330--Hb_011161_030 Hb_000173_200 Hb_000173_200 Hb_003228_070--Hb_000173_200 Hb_136850_040 Hb_136850_040 Hb_003228_070--Hb_136850_040 Hb_004607_100 Hb_004607_100 Hb_003228_070--Hb_004607_100 Hb_002345_080 Hb_002345_080 Hb_003228_070--Hb_002345_080 Hb_003228_070--Hb_000836_590 Hb_048476_160 Hb_048476_160 Hb_158803_020--Hb_048476_160 Hb_083862_010 Hb_083862_010 Hb_158803_020--Hb_083862_010 Hb_107495_050 Hb_107495_050 Hb_158803_020--Hb_107495_050 Hb_125981_010 Hb_125981_010 Hb_158803_020--Hb_125981_010 Hb_102129_010 Hb_102129_010 Hb_158803_020--Hb_102129_010 Hb_158803_020--Hb_009773_040 Hb_010964_010 Hb_010964_010 Hb_181810_010--Hb_010964_010 Hb_000819_040 Hb_000819_040 Hb_181810_010--Hb_000819_040 Hb_004032_220 Hb_004032_220 Hb_181810_010--Hb_004032_220 Hb_000340_060 Hb_000340_060 Hb_181810_010--Hb_000340_060 Hb_000059_260 Hb_000059_260 Hb_181810_010--Hb_000059_260 Hb_002960_100 Hb_002960_100 Hb_181810_010--Hb_002960_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.428494 0.172558 0.0938413 0.132953 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis