Hb_000111_220

Information

Type -
Description -
Location Contig111: 226583-261069
Sequence    

Annotation

kegg
ID rcu:RCOM_0919910
description glutamate receptor 2 plant, putative
nr
ID CBI23973.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q8LGN0
description Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3
trembl
ID F6H9F0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0069g00330 PE=4 SV=1
Gene Ontology
ID GO:0016020
description glutamate receptor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03391: 225153-225891 , PASA_asmbl_03392: 225892-226094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_220 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000836_590 0.1879688875 - - hypothetical protein JCGZ_14318 [Jatropha curcas]
3 Hb_000893_050 0.2073159737 - - structural constituent of cell wall, putative [Ricinus communis]
4 Hb_004785_120 0.2120835763 - - Receptor protein kinase 1 [Theobroma cacao]
5 Hb_001021_110 0.2255896543 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
6 Hb_055147_010 0.2316841185 - - thioredoxin H-type 7 [Hevea brasiliensis]
7 Hb_000438_040 0.2418954046 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
8 Hb_000184_080 0.2423912492 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
9 Hb_004607_100 0.2426621284 - - PREDICTED: uncharacterized protein LOC103445866 [Malus domestica]
10 Hb_005545_090 0.243634984 - - -
11 Hb_000996_200 0.252153211 - - PREDICTED: (+)-neomenthol dehydrogenase-like [Populus euphratica]
12 Hb_002481_070 0.2523766489 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
13 Hb_000389_250 0.2535700383 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21556 [Jatropha curcas]
14 Hb_001300_120 0.2559303958 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
15 Hb_000395_030 0.2569055689 - - oligopeptide transporter, putative [Ricinus communis]
16 Hb_003751_050 0.2572905368 - - PREDICTED: amino acid permease 4-like [Jatropha curcas]
17 Hb_005306_040 0.2574304296 - - calmodulin binding protein, putative [Ricinus communis]
18 Hb_000035_300 0.2580911264 - - conserved hypothetical protein [Ricinus communis]
19 Hb_019952_010 0.258547234 - - -
20 Hb_012404_050 0.2601678893 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]

Gene co-expression network

sample Hb_000111_220 Hb_000111_220 Hb_000836_590 Hb_000836_590 Hb_000111_220--Hb_000836_590 Hb_000893_050 Hb_000893_050 Hb_000111_220--Hb_000893_050 Hb_004785_120 Hb_004785_120 Hb_000111_220--Hb_004785_120 Hb_001021_110 Hb_001021_110 Hb_000111_220--Hb_001021_110 Hb_055147_010 Hb_055147_010 Hb_000111_220--Hb_055147_010 Hb_000438_040 Hb_000438_040 Hb_000111_220--Hb_000438_040 Hb_000389_250 Hb_000389_250 Hb_000836_590--Hb_000389_250 Hb_181810_010 Hb_181810_010 Hb_000836_590--Hb_181810_010 Hb_006395_020 Hb_006395_020 Hb_000836_590--Hb_006395_020 Hb_001405_250 Hb_001405_250 Hb_000836_590--Hb_001405_250 Hb_002205_260 Hb_002205_260 Hb_000836_590--Hb_002205_260 Hb_003751_050 Hb_003751_050 Hb_000893_050--Hb_003751_050 Hb_002374_360 Hb_002374_360 Hb_000893_050--Hb_002374_360 Hb_006925_060 Hb_006925_060 Hb_000893_050--Hb_006925_060 Hb_000862_060 Hb_000862_060 Hb_000893_050--Hb_000862_060 Hb_000893_050--Hb_055147_010 Hb_000046_590 Hb_000046_590 Hb_000893_050--Hb_000046_590 Hb_004785_120--Hb_055147_010 Hb_004785_120--Hb_001021_110 Hb_000996_200 Hb_000996_200 Hb_004785_120--Hb_000996_200 Hb_012404_050 Hb_012404_050 Hb_004785_120--Hb_012404_050 Hb_012545_080 Hb_012545_080 Hb_004785_120--Hb_012545_080 Hb_000110_330 Hb_000110_330 Hb_004785_120--Hb_000110_330 Hb_000523_060 Hb_000523_060 Hb_001021_110--Hb_000523_060 Hb_025030_010 Hb_025030_010 Hb_001021_110--Hb_025030_010 Hb_001021_110--Hb_000996_200 Hb_005545_090 Hb_005545_090 Hb_001021_110--Hb_005545_090 Hb_002481_070 Hb_002481_070 Hb_001021_110--Hb_002481_070 Hb_055147_010--Hb_012404_050 Hb_000720_110 Hb_000720_110 Hb_055147_010--Hb_000720_110 Hb_055147_010--Hb_000996_200 Hb_055147_010--Hb_000110_330 Hb_055147_010--Hb_000862_060 Hb_000184_080 Hb_000184_080 Hb_000438_040--Hb_000184_080 Hb_000021_120 Hb_000021_120 Hb_000438_040--Hb_000021_120 Hb_007481_020 Hb_007481_020 Hb_000438_040--Hb_007481_020 Hb_047923_020 Hb_047923_020 Hb_000438_040--Hb_047923_020 Hb_004044_060 Hb_004044_060 Hb_000438_040--Hb_004044_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0243743 0.0129284 0.00142282 0.00424499 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00746254 0

CAGE analysis