Hb_000438_040

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig438: 49760-55210
Sequence    

Annotation

kegg
ID pop:POPTR_0014s00510g
description hypothetical protein
nr
ID XP_012090562.1
description PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000438_040 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
2 Hb_000184_080 0.1931114001 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
3 Hb_000021_120 0.2096448456 - - PREDICTED: uncharacterized protein LOC104115996 isoform X1 [Nicotiana tomentosiformis]
4 Hb_007481_020 0.2280325156 - - -
5 Hb_047923_020 0.2316903142 - - polyprotein [Citrus endogenous pararetrovirus]
6 Hb_000111_220 0.2418954046 - - unnamed protein product [Vitis vinifera]
7 Hb_004044_060 0.2530671034 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003793_020 0.2550763993 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000035_300 0.2551631481 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000291_020 0.2624054183 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
11 Hb_166257_010 0.264184365 - - hypothetical protein JCGZ_21808 [Jatropha curcas]
12 Hb_124207_010 0.2669075576 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_004604_020 0.2670501112 - - PREDICTED: uncharacterized protein LOC102581016 [Solanum tuberosum]
14 Hb_002787_100 0.2696678931 - - PREDICTED: uncharacterized protein LOC105637209 [Jatropha curcas]
15 Hb_012702_020 0.2716270953 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
16 Hb_015912_010 0.2732557798 - - cytochrome P450, putative [Ricinus communis]
17 Hb_000101_060 0.2741305289 - - -
18 Hb_003752_130 0.2759139052 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
19 Hb_004324_410 0.2771917928 - - hypothetical protein JCGZ_26025 [Jatropha curcas]
20 Hb_012553_010 0.2794918306 - - hypothetical protein JCGZ_10552 [Jatropha curcas]

Gene co-expression network

sample Hb_000438_040 Hb_000438_040 Hb_000184_080 Hb_000184_080 Hb_000438_040--Hb_000184_080 Hb_000021_120 Hb_000021_120 Hb_000438_040--Hb_000021_120 Hb_007481_020 Hb_007481_020 Hb_000438_040--Hb_007481_020 Hb_047923_020 Hb_047923_020 Hb_000438_040--Hb_047923_020 Hb_000111_220 Hb_000111_220 Hb_000438_040--Hb_000111_220 Hb_004044_060 Hb_004044_060 Hb_000438_040--Hb_004044_060 Hb_004041_070 Hb_004041_070 Hb_000184_080--Hb_004041_070 Hb_136850_040 Hb_136850_040 Hb_000184_080--Hb_136850_040 Hb_000389_250 Hb_000389_250 Hb_000184_080--Hb_000389_250 Hb_000184_080--Hb_000111_220 Hb_003793_020 Hb_003793_020 Hb_000184_080--Hb_003793_020 Hb_000021_120--Hb_007481_020 Hb_012702_020 Hb_012702_020 Hb_000021_120--Hb_012702_020 Hb_003752_130 Hb_003752_130 Hb_000021_120--Hb_003752_130 Hb_015912_010 Hb_015912_010 Hb_000021_120--Hb_015912_010 Hb_000101_060 Hb_000101_060 Hb_000021_120--Hb_000101_060 Hb_001951_030 Hb_001951_030 Hb_007481_020--Hb_001951_030 Hb_000097_040 Hb_000097_040 Hb_007481_020--Hb_000097_040 Hb_007144_010 Hb_007144_010 Hb_007481_020--Hb_007144_010 Hb_005157_010 Hb_005157_010 Hb_007481_020--Hb_005157_010 Hb_004604_020 Hb_004604_020 Hb_047923_020--Hb_004604_020 Hb_047923_020--Hb_003793_020 Hb_047923_020--Hb_004044_060 Hb_047923_020--Hb_004041_070 Hb_000009_260 Hb_000009_260 Hb_047923_020--Hb_000009_260 Hb_000836_590 Hb_000836_590 Hb_000111_220--Hb_000836_590 Hb_000893_050 Hb_000893_050 Hb_000111_220--Hb_000893_050 Hb_004785_120 Hb_004785_120 Hb_000111_220--Hb_004785_120 Hb_001021_110 Hb_001021_110 Hb_000111_220--Hb_001021_110 Hb_055147_010 Hb_055147_010 Hb_000111_220--Hb_055147_010 Hb_004044_060--Hb_000009_260 Hb_128912_010 Hb_128912_010 Hb_004044_060--Hb_128912_010 Hb_004044_060--Hb_003793_020 Hb_001545_220 Hb_001545_220 Hb_004044_060--Hb_001545_220 Hb_004324_410 Hb_004324_410 Hb_004044_060--Hb_004324_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0243131 0.00437261 0 0.00591506 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0125402 0

CAGE analysis