Hb_003793_020

Information

Type -
Description -
Location Contig3793: 10346-10645
Sequence    

Annotation

kegg
ID rcu:RCOM_0381670
description hypothetical protein
nr
ID XP_002528576.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRF7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0381670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003793_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004041_070 0.099065839 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004604_020 0.1211476808 - - PREDICTED: uncharacterized protein LOC102581016 [Solanum tuberosum]
4 Hb_000009_260 0.139885164 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
5 Hb_047923_020 0.1415675511 - - polyprotein [Citrus endogenous pararetrovirus]
6 Hb_004044_060 0.1805174842 - - conserved hypothetical protein [Ricinus communis]
7 Hb_102408_010 0.1853450304 - - hypothetical protein JCGZ_27060 [Jatropha curcas]
8 Hb_012278_010 0.2384432829 - - -
9 Hb_000184_080 0.2435023251 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
10 Hb_004324_410 0.2542492508 - - hypothetical protein JCGZ_26025 [Jatropha curcas]
11 Hb_000438_040 0.2550763993 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
12 Hb_017987_080 0.2858687739 - - Uncharacterized protein TCM_001832 [Theobroma cacao]
13 Hb_128912_010 0.288945529 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
14 Hb_000336_300 0.2951035346 - - -
15 Hb_000359_110 0.2963506616 transcription factor TF Family: NAC NAC domain-containing protein 42 [Theobroma cacao]
16 Hb_001081_040 0.2980812879 - - hypothetical protein MIMGU_mgv11b021166mg, partial [Erythranthe guttata]
17 Hb_000016_010 0.2993442492 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
18 Hb_008424_010 0.2995537044 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_124302_030 0.3042456549 - - PREDICTED: serine carboxypeptidase-like [Beta vulgaris subsp. vulgaris]
20 Hb_000994_010 0.3054810899 - - hypothetical protein JCGZ_13899 [Jatropha curcas]

Gene co-expression network

sample Hb_003793_020 Hb_003793_020 Hb_004041_070 Hb_004041_070 Hb_003793_020--Hb_004041_070 Hb_004604_020 Hb_004604_020 Hb_003793_020--Hb_004604_020 Hb_000009_260 Hb_000009_260 Hb_003793_020--Hb_000009_260 Hb_047923_020 Hb_047923_020 Hb_003793_020--Hb_047923_020 Hb_004044_060 Hb_004044_060 Hb_003793_020--Hb_004044_060 Hb_102408_010 Hb_102408_010 Hb_003793_020--Hb_102408_010 Hb_004041_070--Hb_102408_010 Hb_004041_070--Hb_000009_260 Hb_012278_010 Hb_012278_010 Hb_004041_070--Hb_012278_010 Hb_004041_070--Hb_004604_020 Hb_004041_070--Hb_004044_060 Hb_004604_020--Hb_047923_020 Hb_004604_020--Hb_004044_060 Hb_004604_020--Hb_000009_260 Hb_000046_230 Hb_000046_230 Hb_004604_020--Hb_000046_230 Hb_000009_260--Hb_102408_010 Hb_000009_260--Hb_004044_060 Hb_000009_260--Hb_012278_010 Hb_004324_410 Hb_004324_410 Hb_000009_260--Hb_004324_410 Hb_047923_020--Hb_004044_060 Hb_000438_040 Hb_000438_040 Hb_047923_020--Hb_000438_040 Hb_047923_020--Hb_004041_070 Hb_047923_020--Hb_000009_260 Hb_128912_010 Hb_128912_010 Hb_004044_060--Hb_128912_010 Hb_001545_220 Hb_001545_220 Hb_004044_060--Hb_001545_220 Hb_004044_060--Hb_004324_410 Hb_102408_010--Hb_012278_010 Hb_000994_010 Hb_000994_010 Hb_102408_010--Hb_000994_010 Hb_001081_040 Hb_001081_040 Hb_102408_010--Hb_001081_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.62022 0 0 0.457404 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.406442 0

CAGE analysis