Hb_102408_010

Information

Type -
Description -
Location Contig102408: 279-1790
Sequence    

Annotation

kegg
ID tcc:TCM_022421
description Haloacid dehalogenase-like hydrolase superfamily protein, putative isoform 1
nr
ID KDP43111.1
description hypothetical protein JCGZ_27060 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3R7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102408_010 0.0 - - hypothetical protein JCGZ_27060 [Jatropha curcas]
2 Hb_012278_010 0.0556623579 - - -
3 Hb_004041_070 0.089365081 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000009_260 0.1413203488 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
5 Hb_003793_020 0.1853450304 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000994_010 0.1979251848 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
7 Hb_001081_040 0.2124679591 - - hypothetical protein MIMGU_mgv11b021166mg, partial [Erythranthe guttata]
8 Hb_007658_030 0.2169270792 - - PREDICTED: lupeol synthase-like isoform X1 [Populus euphratica]
9 Hb_000484_050 0.2170129691 - - hypothetical protein CICLE_v10028549mg [Citrus clementina]
10 Hb_011909_130 0.2182213694 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
11 Hb_030593_010 0.2203401346 - - hypothetical protein JCGZ_06063 [Jatropha curcas]
12 Hb_034558_010 0.2203834585 - - -
13 Hb_001766_090 0.2216363233 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
14 Hb_041177_010 0.2233118908 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
15 Hb_128894_010 0.2236098881 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_023827_010 0.2241335091 - - Cucumber peeling cupredoxin, putative [Ricinus communis]
17 Hb_011639_130 0.2248866798 - - mads box protein, putative [Ricinus communis]
18 Hb_004829_050 0.2252465662 - - hypothetical protein TRIUR3_09654 [Triticum urartu]
19 Hb_001403_100 0.2273869478 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
20 Hb_001104_260 0.2275173256 - - hypothetical protein JCGZ_23628 [Jatropha curcas]

Gene co-expression network

sample Hb_102408_010 Hb_102408_010 Hb_012278_010 Hb_012278_010 Hb_102408_010--Hb_012278_010 Hb_004041_070 Hb_004041_070 Hb_102408_010--Hb_004041_070 Hb_000009_260 Hb_000009_260 Hb_102408_010--Hb_000009_260 Hb_003793_020 Hb_003793_020 Hb_102408_010--Hb_003793_020 Hb_000994_010 Hb_000994_010 Hb_102408_010--Hb_000994_010 Hb_001081_040 Hb_001081_040 Hb_102408_010--Hb_001081_040 Hb_012278_010--Hb_004041_070 Hb_012278_010--Hb_000009_260 Hb_034558_010 Hb_034558_010 Hb_012278_010--Hb_034558_010 Hb_128894_010 Hb_128894_010 Hb_012278_010--Hb_128894_010 Hb_007658_030 Hb_007658_030 Hb_012278_010--Hb_007658_030 Hb_004041_070--Hb_003793_020 Hb_004041_070--Hb_000009_260 Hb_004604_020 Hb_004604_020 Hb_004041_070--Hb_004604_020 Hb_004044_060 Hb_004044_060 Hb_004041_070--Hb_004044_060 Hb_000009_260--Hb_003793_020 Hb_000009_260--Hb_004044_060 Hb_004324_410 Hb_004324_410 Hb_000009_260--Hb_004324_410 Hb_003793_020--Hb_004604_020 Hb_047923_020 Hb_047923_020 Hb_003793_020--Hb_047923_020 Hb_003793_020--Hb_004044_060 Hb_000994_010--Hb_001081_040 Hb_000336_300 Hb_000336_300 Hb_000994_010--Hb_000336_300 Hb_000016_010 Hb_000016_010 Hb_000994_010--Hb_000016_010 Hb_008424_010 Hb_008424_010 Hb_000994_010--Hb_008424_010 Hb_041177_010 Hb_041177_010 Hb_000994_010--Hb_041177_010 Hb_005432_050 Hb_005432_050 Hb_000994_010--Hb_005432_050 Hb_001081_040--Hb_000336_300 Hb_001081_040--Hb_000016_010 Hb_001081_040--Hb_008424_010 Hb_001081_040--Hb_005432_050 Hb_001066_020 Hb_001066_020 Hb_001081_040--Hb_001066_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.553149 0 0 0.059926 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0455709 0

CAGE analysis