Hb_005432_050

Information

Type -
Description -
Location Contig5432: 92467-93852
Sequence    

Annotation

kegg
ID mus:103995568
description uncharacterized protein LOC103995568 isoform X1
nr
ID XP_012448893.1
description PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005432_050 0.0 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
2 Hb_001066_020 0.0226390772 - - PREDICTED: uncharacterized protein LOC104908874, partial [Beta vulgaris subsp. vulgaris]
3 Hb_008424_010 0.0337954936 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_000016_010 0.0350895984 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
5 Hb_133862_010 0.038476228 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
6 Hb_135941_010 0.0418358261 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
7 Hb_012264_040 0.0535756226 - - -
8 Hb_000336_300 0.0912835523 - - -
9 Hb_001081_040 0.1315925685 - - hypothetical protein MIMGU_mgv11b021166mg, partial [Erythranthe guttata]
10 Hb_003637_030 0.140109908 - - -
11 Hb_086484_010 0.1604908146 - - PREDICTED: uncharacterized protein LOC101259761 [Solanum lycopersicum]
12 Hb_102355_010 0.1646296912 - - PREDICTED: uncharacterized protein LOC104094591, partial [Nicotiana tomentosiformis]
13 Hb_000994_010 0.169570998 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
14 Hb_002708_010 0.1853094169 - - -
15 Hb_185830_100 0.1869601433 - - -
16 Hb_001863_210 0.1884493087 - - -
17 Hb_006387_010 0.1968693112 - - PREDICTED: uncharacterized protein LOC105649124 [Jatropha curcas]
18 Hb_049827_010 0.2004244243 - - PREDICTED: uncharacterized protein LOC105762110 [Gossypium raimondii]
19 Hb_003392_010 0.2034497813 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
20 Hb_033623_010 0.2528933757 - - -

Gene co-expression network

sample Hb_005432_050 Hb_005432_050 Hb_001066_020 Hb_001066_020 Hb_005432_050--Hb_001066_020 Hb_008424_010 Hb_008424_010 Hb_005432_050--Hb_008424_010 Hb_000016_010 Hb_000016_010 Hb_005432_050--Hb_000016_010 Hb_133862_010 Hb_133862_010 Hb_005432_050--Hb_133862_010 Hb_135941_010 Hb_135941_010 Hb_005432_050--Hb_135941_010 Hb_012264_040 Hb_012264_040 Hb_005432_050--Hb_012264_040 Hb_001066_020--Hb_133862_010 Hb_001066_020--Hb_135941_010 Hb_001066_020--Hb_012264_040 Hb_001066_020--Hb_008424_010 Hb_001066_020--Hb_000016_010 Hb_008424_010--Hb_000016_010 Hb_000336_300 Hb_000336_300 Hb_008424_010--Hb_000336_300 Hb_008424_010--Hb_133862_010 Hb_008424_010--Hb_135941_010 Hb_000016_010--Hb_000336_300 Hb_000016_010--Hb_133862_010 Hb_000016_010--Hb_135941_010 Hb_133862_010--Hb_135941_010 Hb_133862_010--Hb_012264_040 Hb_135941_010--Hb_012264_040 Hb_003637_030 Hb_003637_030 Hb_012264_040--Hb_003637_030 Hb_012264_040--Hb_008424_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0633191 0 0 0.02862 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis