Hb_133862_010

Information

Type -
Description -
Location Contig133862: 24-518
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13360g
description POPTRDRAFT_876512; hypothetical protein
nr
ID XP_002312977.2
description hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
swissprot
ID Q54R82
description Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2
trembl
ID B9HR94
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13360g PE=4 SV=2
Gene Ontology
ID GO:0016301
description mitogen-activated protein kinase kinase kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133862_010 0.0 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
2 Hb_135941_010 0.0033618965 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
3 Hb_012264_040 0.0151124794 - - -
4 Hb_001066_020 0.015843123 - - PREDICTED: uncharacterized protein LOC104908874, partial [Beta vulgaris subsp. vulgaris]
5 Hb_005432_050 0.038476228 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
6 Hb_008424_010 0.0722285878 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_000016_010 0.0735201746 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
8 Hb_003637_030 0.1018480984 - - -
9 Hb_086484_010 0.1223052131 - - PREDICTED: uncharacterized protein LOC101259761 [Solanum lycopersicum]
10 Hb_102355_010 0.1264608285 - - PREDICTED: uncharacterized protein LOC104094591, partial [Nicotiana tomentosiformis]
11 Hb_000336_300 0.1295364184 - - -
12 Hb_002708_010 0.1472304731 - - -
13 Hb_185830_100 0.1488888251 - - -
14 Hb_001863_210 0.1503849261 - - -
15 Hb_006387_010 0.158845149 - - PREDICTED: uncharacterized protein LOC105649124 [Jatropha curcas]
16 Hb_049827_010 0.1624177559 - - PREDICTED: uncharacterized protein LOC105762110 [Gossypium raimondii]
17 Hb_003392_010 0.1654582384 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
18 Hb_001081_040 0.1696253981 - - hypothetical protein MIMGU_mgv11b021166mg, partial [Erythranthe guttata]
19 Hb_000994_010 0.2073131351 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
20 Hb_007943_010 0.249194978 - - -

Gene co-expression network

sample Hb_133862_010 Hb_133862_010 Hb_135941_010 Hb_135941_010 Hb_133862_010--Hb_135941_010 Hb_012264_040 Hb_012264_040 Hb_133862_010--Hb_012264_040 Hb_001066_020 Hb_001066_020 Hb_133862_010--Hb_001066_020 Hb_005432_050 Hb_005432_050 Hb_133862_010--Hb_005432_050 Hb_008424_010 Hb_008424_010 Hb_133862_010--Hb_008424_010 Hb_000016_010 Hb_000016_010 Hb_133862_010--Hb_000016_010 Hb_135941_010--Hb_012264_040 Hb_135941_010--Hb_001066_020 Hb_135941_010--Hb_005432_050 Hb_135941_010--Hb_008424_010 Hb_135941_010--Hb_000016_010 Hb_012264_040--Hb_001066_020 Hb_012264_040--Hb_005432_050 Hb_003637_030 Hb_003637_030 Hb_012264_040--Hb_003637_030 Hb_012264_040--Hb_008424_010 Hb_001066_020--Hb_005432_050 Hb_001066_020--Hb_008424_010 Hb_001066_020--Hb_000016_010 Hb_005432_050--Hb_008424_010 Hb_005432_050--Hb_000016_010 Hb_008424_010--Hb_000016_010 Hb_000336_300 Hb_000336_300 Hb_008424_010--Hb_000336_300 Hb_000016_010--Hb_000336_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.100021 0 0 0.0548033 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis