Hb_001066_020

Information

Type -
Description -
Location Contig1066: 80881-85920
Sequence    

Annotation

kegg
ID bvg:104908874
description uncharacterized LOC104908874
nr
ID XP_010696343.1
description PREDICTED: uncharacterized protein LOC104908874, partial [Beta vulgaris subsp. vulgaris]
swissprot
ID P31795
description Pol polyprotein (Fragment) OS=Radiation murine leukemia virus (strain Kaplan) GN=pol PE=3 SV=1
trembl
ID A5AMY5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038273 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001066_020 0.0 - - PREDICTED: uncharacterized protein LOC104908874, partial [Beta vulgaris subsp. vulgaris]
2 Hb_133862_010 0.015843123 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
3 Hb_135941_010 0.0192045941 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
4 Hb_005432_050 0.0226390772 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
5 Hb_012264_040 0.030952553 - - -
6 Hb_008424_010 0.0564143907 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_000016_010 0.057707211 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
8 Hb_000336_300 0.1138048731 - - -
9 Hb_003637_030 0.1176183036 - - -
10 Hb_086484_010 0.1380469626 - - PREDICTED: uncharacterized protein LOC101259761 [Solanum lycopersicum]
11 Hb_102355_010 0.1421962706 - - PREDICTED: uncharacterized protein LOC104094591, partial [Nicotiana tomentosiformis]
12 Hb_001081_040 0.1539897994 - - hypothetical protein MIMGU_mgv11b021166mg, partial [Erythranthe guttata]
13 Hb_002708_010 0.1629317646 - - -
14 Hb_185830_100 0.1645872025 - - -
15 Hb_001863_210 0.1660806509 - - -
16 Hb_006387_010 0.1745254532 - - PREDICTED: uncharacterized protein LOC105649124 [Jatropha curcas]
17 Hb_049827_010 0.1780913339 - - PREDICTED: uncharacterized protein LOC105762110 [Gossypium raimondii]
18 Hb_003392_010 0.1811259922 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
19 Hb_000994_010 0.1918015481 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
20 Hb_004846_170 0.2562372158 - - heat-shock protein 70 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001066_020 Hb_001066_020 Hb_133862_010 Hb_133862_010 Hb_001066_020--Hb_133862_010 Hb_135941_010 Hb_135941_010 Hb_001066_020--Hb_135941_010 Hb_005432_050 Hb_005432_050 Hb_001066_020--Hb_005432_050 Hb_012264_040 Hb_012264_040 Hb_001066_020--Hb_012264_040 Hb_008424_010 Hb_008424_010 Hb_001066_020--Hb_008424_010 Hb_000016_010 Hb_000016_010 Hb_001066_020--Hb_000016_010 Hb_133862_010--Hb_135941_010 Hb_133862_010--Hb_012264_040 Hb_133862_010--Hb_005432_050 Hb_133862_010--Hb_008424_010 Hb_133862_010--Hb_000016_010 Hb_135941_010--Hb_012264_040 Hb_135941_010--Hb_005432_050 Hb_135941_010--Hb_008424_010 Hb_135941_010--Hb_000016_010 Hb_005432_050--Hb_008424_010 Hb_005432_050--Hb_000016_010 Hb_005432_050--Hb_012264_040 Hb_003637_030 Hb_003637_030 Hb_012264_040--Hb_003637_030 Hb_012264_040--Hb_008424_010 Hb_008424_010--Hb_000016_010 Hb_000336_300 Hb_000336_300 Hb_008424_010--Hb_000336_300 Hb_000016_010--Hb_000336_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0104888 0 0 0.00531319 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis