Hb_041177_010

Information

Type -
Description -
Location Contig41177: 17104-27503
Sequence    

Annotation

kegg
ID vvi:100266230
description MLP-like protein 34
nr
ID XP_002284534.2
description PREDICTED: MLP-like protein 34 [Vitis vinifera]
swissprot
ID Q9SSK7
description MLP-like protein 34 OS=Arabidopsis thaliana GN=MLP34 PE=2 SV=1
trembl
ID A0A067KPJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04715 PE=4 SV=1
Gene Ontology
ID GO:0006952
description mlp-like protein 31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041177_010 0.0 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
2 Hb_000994_010 0.1404881012 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
3 Hb_172864_010 0.1603795191 - - PREDICTED: 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase-like [Jatropha curcas]
4 Hb_001081_040 0.1623058555 - - hypothetical protein MIMGU_mgv11b021166mg, partial [Erythranthe guttata]
5 Hb_004352_020 0.168846806 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_000380_070 0.1697442715 - - conserved hypothetical protein [Ricinus communis]
7 Hb_033623_010 0.1737253682 - - -
8 Hb_015784_010 0.1852631623 - - hypothetical protein VITISV_019364 [Vitis vinifera]
9 Hb_000336_300 0.190591062 - - -
10 Hb_012278_010 0.206151444 - - -
11 Hb_004108_010 0.2108898374 - - -
12 Hb_089032_060 0.2163430116 - - Uncharacterized protein TCM_027342 [Theobroma cacao]
13 Hb_032299_030 0.2164372311 transcription factor TF Family: MYB PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
14 Hb_189237_010 0.2167377649 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_102408_010 0.2233118908 - - hypothetical protein JCGZ_27060 [Jatropha curcas]
16 Hb_000395_160 0.2289714476 - - hypothetical protein POPTR_0006s25490g [Populus trichocarpa]
17 Hb_005687_020 0.229396407 - - P66 protein [Hevea brasiliensis]
18 Hb_113388_010 0.2332564321 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000016_010 0.2348808665 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
20 Hb_008424_010 0.2359435082 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_041177_010 Hb_041177_010 Hb_000994_010 Hb_000994_010 Hb_041177_010--Hb_000994_010 Hb_172864_010 Hb_172864_010 Hb_041177_010--Hb_172864_010 Hb_001081_040 Hb_001081_040 Hb_041177_010--Hb_001081_040 Hb_004352_020 Hb_004352_020 Hb_041177_010--Hb_004352_020 Hb_000380_070 Hb_000380_070 Hb_041177_010--Hb_000380_070 Hb_033623_010 Hb_033623_010 Hb_041177_010--Hb_033623_010 Hb_000994_010--Hb_001081_040 Hb_000336_300 Hb_000336_300 Hb_000994_010--Hb_000336_300 Hb_000016_010 Hb_000016_010 Hb_000994_010--Hb_000016_010 Hb_008424_010 Hb_008424_010 Hb_000994_010--Hb_008424_010 Hb_005432_050 Hb_005432_050 Hb_000994_010--Hb_005432_050 Hb_172864_010--Hb_004352_020 Hb_172864_010--Hb_000380_070 Hb_089032_060 Hb_089032_060 Hb_172864_010--Hb_089032_060 Hb_032299_030 Hb_032299_030 Hb_172864_010--Hb_032299_030 Hb_002641_100 Hb_002641_100 Hb_172864_010--Hb_002641_100 Hb_001081_040--Hb_000336_300 Hb_001081_040--Hb_000016_010 Hb_001081_040--Hb_008424_010 Hb_001081_040--Hb_005432_050 Hb_001066_020 Hb_001066_020 Hb_001081_040--Hb_001066_020 Hb_004352_020--Hb_000380_070 Hb_004352_020--Hb_089032_060 Hb_004352_020--Hb_032299_030 Hb_005687_020 Hb_005687_020 Hb_004352_020--Hb_005687_020 Hb_000395_160 Hb_000395_160 Hb_004352_020--Hb_000395_160 Hb_000380_070--Hb_089032_060 Hb_113388_010 Hb_113388_010 Hb_000380_070--Hb_113388_010 Hb_000380_070--Hb_032299_030 Hb_000380_070--Hb_000395_160 Hb_004108_010 Hb_004108_010 Hb_033623_010--Hb_004108_010 Hb_189237_010 Hb_189237_010 Hb_033623_010--Hb_189237_010 Hb_144951_010 Hb_144951_010 Hb_033623_010--Hb_144951_010 Hb_000684_340 Hb_000684_340 Hb_033623_010--Hb_000684_340 Hb_033623_010--Hb_001081_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.15661 0 0 0.323825 0.107173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis