Hb_144951_010

Information

Type -
Description -
Location Contig144951: 95-984
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa019056mg
description hypothetical protein
nr
ID AAP44645.1
description putative reverse transcriptase [Oryza sativa Japonica Group]
swissprot
ID -
description -
trembl
ID Q7Y193
description Putative reverse transcriptase OS=Oryza sativa subsp. japonica GN=OSJNBa0039O18.22 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_144951_010 0.0 - - putative reverse transcriptase [Oryza sativa Japonica Group]
2 Hb_189237_010 0.1250072969 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_005389_010 0.1408212147 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
4 Hb_004108_010 0.1576530022 - - -
5 Hb_033623_010 0.189674595 - - -
6 Hb_050495_010 0.2234663741 - - heat-shock protein, putative [Ricinus communis]
7 Hb_000359_110 0.2289874702 transcription factor TF Family: NAC NAC domain-containing protein 42 [Theobroma cacao]
8 Hb_093432_020 0.2446596781 - - PREDICTED: QWRF motif-containing protein 3 [Jatropha curcas]
9 Hb_002928_070 0.2464333818 - - -
10 Hb_000684_340 0.25061851 - - PREDICTED: L-ascorbate peroxidase 2, cytosolic [Pyrus x bretschneideri]
11 Hb_041177_010 0.2641454441 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
12 Hb_000014_140 0.2728397856 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
13 Hb_009922_010 0.2864264975 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
14 Hb_003893_020 0.2899168566 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]
15 Hb_008064_010 0.2982694935 - - PREDICTED: ubiquitin-like domain-containing CTD phosphatase 1 [Jatropha curcas]
16 Hb_154471_010 0.2991874557 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
17 Hb_004041_070 0.3021583752 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001922_160 0.3064397889 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
19 Hb_001565_120 0.3080178941 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
20 Hb_102408_010 0.3081715645 - - hypothetical protein JCGZ_27060 [Jatropha curcas]

Gene co-expression network

sample Hb_144951_010 Hb_144951_010 Hb_189237_010 Hb_189237_010 Hb_144951_010--Hb_189237_010 Hb_005389_010 Hb_005389_010 Hb_144951_010--Hb_005389_010 Hb_004108_010 Hb_004108_010 Hb_144951_010--Hb_004108_010 Hb_033623_010 Hb_033623_010 Hb_144951_010--Hb_033623_010 Hb_050495_010 Hb_050495_010 Hb_144951_010--Hb_050495_010 Hb_000359_110 Hb_000359_110 Hb_144951_010--Hb_000359_110 Hb_189237_010--Hb_005389_010 Hb_189237_010--Hb_004108_010 Hb_189237_010--Hb_033623_010 Hb_041177_010 Hb_041177_010 Hb_189237_010--Hb_041177_010 Hb_189237_010--Hb_050495_010 Hb_005389_010--Hb_004108_010 Hb_000014_140 Hb_000014_140 Hb_005389_010--Hb_000014_140 Hb_084611_010 Hb_084611_010 Hb_005389_010--Hb_084611_010 Hb_005389_010--Hb_033623_010 Hb_004108_010--Hb_033623_010 Hb_093432_020 Hb_093432_020 Hb_004108_010--Hb_093432_020 Hb_002928_070 Hb_002928_070 Hb_004108_010--Hb_002928_070 Hb_033623_010--Hb_041177_010 Hb_000684_340 Hb_000684_340 Hb_033623_010--Hb_000684_340 Hb_001081_040 Hb_001081_040 Hb_033623_010--Hb_001081_040 Hb_167316_010 Hb_167316_010 Hb_050495_010--Hb_167316_010 Hb_116685_010 Hb_116685_010 Hb_050495_010--Hb_116685_010 Hb_001565_120 Hb_001565_120 Hb_050495_010--Hb_001565_120 Hb_050495_010--Hb_004108_010 Hb_154471_010 Hb_154471_010 Hb_000359_110--Hb_154471_010 Hb_000359_110--Hb_005389_010 Hb_001514_040 Hb_001514_040 Hb_000359_110--Hb_001514_040 Hb_001922_160 Hb_001922_160 Hb_000359_110--Hb_001922_160 Hb_000184_080 Hb_000184_080 Hb_000359_110--Hb_000184_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.35843 0 0.0302554 0.334114 0.281223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0700314 0

CAGE analysis